3c0v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:04, 13 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c0v.png|left|200px]]
 
-
<!--
+
==Crystal structure of cytokinin-specific binding protein in complex with cytokinin and Ta6Br12==
-
The line below this paragraph, containing "STRUCTURE_3c0v", creates the "Structure Box" on the page.
+
<StructureSection load='3c0v' size='340' side='right'caption='[[3c0v]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3c0v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C0V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C0V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TBR:HEXATANTALUM+DODECABROMIDE'>TBR</scene>, <scene name='pdbligand=ZEA:(2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL'>ZEA</scene></td></tr>
-
{{STRUCTURE_3c0v| PDB=3c0v | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c0v OCA], [https://pdbe.org/3c0v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c0v RCSB], [https://www.ebi.ac.uk/pdbsum/3c0v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c0v ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of cytokinin-specific binding protein in complex with cytokinin and Ta6Br12===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PHBP_VIGRR PHBP_VIGRR] Binds the cytokinin trans-zeatin in vitro (PubMed:16998071, PubMed:18453695). Binds gibberellin A3 (GA3) in vitro (PubMed:25004979).<ref>PMID:16998071</ref> <ref>PMID:18453695</ref> <ref>PMID:25004979</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_18453695}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18453695 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c0/3c0v_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_18453695}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3c0v]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Vigna_radiata Vigna radiata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C0V OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c0v ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:18453695</ref><ref group="xtra">PMID:16998071</ref><references group="xtra"/>
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Vigna radiata]]
[[Category: Vigna radiata]]
-
[[Category: Biesiadka, J.]]
+
[[Category: Biesiadka J]]
-
[[Category: Bujacz, A.]]
+
[[Category: Bujacz A]]
-
[[Category: Bujacz, G.]]
+
[[Category: Bujacz G]]
-
[[Category: Jaskolski, M.]]
+
[[Category: Jaskolski M]]
-
[[Category: Pasternak, O.]]
+
[[Category: Pasternak O]]
-
[[Category: Sikorski, M.]]
+
[[Category: Sikorski M]]
-
[[Category: Cytokinin]]
+
-
[[Category: Mad]]
+
-
[[Category: Pathogenesis-related protein]]
+
-
[[Category: Plant defense]]
+
-
[[Category: Plant protein]]
+
-
[[Category: Ta6br12 complex]]
+
-
[[Category: Zeatin]]
+

Current revision

Crystal structure of cytokinin-specific binding protein in complex with cytokinin and Ta6Br12

PDB ID 3c0v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools