This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2z8g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2z8g" [edit=sysop:move=sysop])
Current revision (06:33, 3 April 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2z8g.png|left|200px]]
 
-
<!--
+
==Aspergillus niger ATCC9642 isopullulanase complexed with isopanose==
-
The line below this paragraph, containing "STRUCTURE_2z8g", creates the "Structure Box" on the page.
+
<StructureSection load='2z8g' size='340' side='right'caption='[[2z8g]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2z8g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z8G FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
{{STRUCTURE_2z8g| PDB=2z8g | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8g OCA], [https://pdbe.org/2z8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z8g RCSB], [https://www.ebi.ac.uk/pdbsum/2z8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8g ProSAT]</span></td></tr>
-
 
+
</table>
-
===Aspergillus niger ATCC9642 isopullulanase complexed with isopanose===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/IPUA_ASPNG IPUA_ASPNG] Hydrolyzes pullulan, a linear polymer which is composed of maltotriose units with alpha-1,6 glucosidic linkages, to produce isopanose (Glca1-4Glca1-6Glc).
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_18155243}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18155243 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/2z8g_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_18155243}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[2z8g]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8G OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z8g ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:18155243</ref><ref group="xtra">PMID:15560783</ref><ref group="xtra">PMID:12834298</ref><references group="xtra"/>
+
</StructureSection>
[[Category: Aspergillus niger]]
[[Category: Aspergillus niger]]
-
[[Category: Isopullulanase]]
+
[[Category: Large Structures]]
-
[[Category: Akeboshi, H.]]
+
[[Category: Akeboshi H]]
-
[[Category: Kamitori, S.]]
+
[[Category: Kamitori S]]
-
[[Category: Koide, A.]]
+
[[Category: Koide A]]
-
[[Category: Mizuno, M.]]
+
[[Category: Mizuno M]]
-
[[Category: Nishikawa, A.]]
+
[[Category: Nishikawa A]]
-
[[Category: Sakano, Y.]]
+
[[Category: Sakano Y]]
-
[[Category: Tonozuka, T.]]
+
[[Category: Tonozuka T]]
-
[[Category: Yamamura, A.]]
+
[[Category: Yamamura A]]
-
[[Category: Yoshida, H.]]
+
[[Category: Yoshida H]]
-
[[Category: Beta-helix]]
+
-
[[Category: Dextranase]]
+
-
[[Category: Gh49]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Glycosidase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Isopullulanase]]
+
-
[[Category: Pullulan]]
+
-
[[Category: Secreted]]
+

Current revision

Aspergillus niger ATCC9642 isopullulanase complexed with isopanose

PDB ID 2z8g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools