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3moj

From Proteopedia

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[[Image:3moj.png|left|200px]]
 
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==Structure of the RNA binding domain of the Bacillus subtilis YxiN protein complexed with a fragment of 23S ribosomal RNA==
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The line below this paragraph, containing "STRUCTURE_3moj", creates the "Structure Box" on the page.
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<StructureSection load='3moj' size='340' side='right'caption='[[3moj]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3moj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MOJ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.902&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3moj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3moj OCA], [https://pdbe.org/3moj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3moj RCSB], [https://www.ebi.ac.uk/pdbsum/3moj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3moj ProSAT]</span></td></tr>
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{{STRUCTURE_3moj| PDB=3moj | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DBPA_BACSU DBPA_BACSU] DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes (Probable).<ref>PMID:10481020</ref> <ref>PMID:19474341</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mo/3moj_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3moj ConSurf].
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<div style="clear:both"></div>
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===Structure of the RNA binding domain of the Bacillus subtilis YxiN protein complexed with a fragment of 23S ribosomal RNA===
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==See Also==
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*[[Helicase 3D structures|Helicase 3D structures]]
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== References ==
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<!--
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_20673833}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 20673833 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_20673833}}
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==About this Structure==
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[[3moj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] and [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MOJ OCA].
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==Reference==
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<ref group="xtra">PMID:20673833</ref><ref group="xtra">PMID:16611943</ref><references group="xtra"/>
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[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Hardin, J W.]]
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[[Category: Large Structures]]
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[[Category: Hu, Y.]]
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[[Category: Hardin JW]]
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[[Category: McKay, D B.]]
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[[Category: Hu Y]]
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[[Category: Ribosomal rna]]
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[[Category: McKay DB]]
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[[Category: Rna]]
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[[Category: Rna binding protein]]
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[[Category: Rna binding protein-rna complex]]
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[[Category: Rna recognition motif]]
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Current revision

Structure of the RNA binding domain of the Bacillus subtilis YxiN protein complexed with a fragment of 23S ribosomal RNA

PDB ID 3moj

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