1wze

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:02, 25 October 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1wze.png|left|200px]]
 
-
<!--
+
==Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus==
-
The line below this paragraph, containing "STRUCTURE_1wze", creates the "Structure Box" on the page.
+
<StructureSection load='1wze' size='340' side='right'caption='[[1wze]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1wze]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WZE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WZE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-
{{STRUCTURE_1wze| PDB=1wze | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wze FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wze OCA], [https://pdbe.org/1wze PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wze RCSB], [https://www.ebi.ac.uk/pdbsum/1wze PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wze ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/MDH_THETH MDH_THETH] Catalyzes the reversible oxidation of malate to oxaloacetate.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_8471603}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 8471603 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wz/1wze_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_8471603}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1wze]] is a 2 chain structure of [[Malate dehydrogenase]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WZE OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wze ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Malate dehydrogenase]]
+
*[[Malate Dehydrogenase 3D structures|Malate Dehydrogenase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:8471603</ref><ref group="xtra">PMID:1920425</ref><ref group="xtra">PMID:2775751</ref><ref group="xtra">PMID:3771528</ref><ref group="xtra">PMID:6848515</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Malate dehydrogenase]]
+
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Fushinobu, S.]]
+
[[Category: Fushinobu S]]
-
[[Category: Kuzuyama, T.]]
+
[[Category: Kuzuyama T]]
-
[[Category: Nishiyama, M.]]
+
[[Category: Nishiyama M]]
-
[[Category: Tomita, T.]]
+
[[Category: Tomita T]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein-nadh complex]]
+
-
[[Category: Seven amino acid residues mutant]]
+

Current revision

Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus

PDB ID 1wze

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools