3jza

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3jza" [edit=sysop:move=sysop])
Current revision (10:14, 21 February 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3jza.png|left|200px]]
 
-
<!--
+
==Crystal structure of human Rab1b in complex with the GEF domain of DrrA/SidM from Legionella pneumophila==
-
The line below this paragraph, containing "STRUCTURE_3jza", creates the "Structure Box" on the page.
+
<StructureSection load='3jza' size='340' side='right'caption='[[3jza]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3jza]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JZA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JZA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_3jza| PDB=3jza | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jza FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jza OCA], [https://pdbe.org/3jza PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jza RCSB], [https://www.ebi.ac.uk/pdbsum/3jza PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jza ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RAB1B_HUMAN RAB1B_HUMAN] Protein transport. Regulates vesicular transport between the endoplasmic reticulum and successive Golgi compartments.<ref>PMID:9437002</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/3jza_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jza ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of human Rab1b in complex with the GEF domain of DrrA/SidM from Legionella pneumophila===
+
==See Also==
-
 
+
*[[Ras-related protein Rab 3D structures|Ras-related protein Rab 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20064470}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 20064470 is the PubMed ID number.
+
</StructureSection>
-
-->
+
-
{{ABSTRACT_PUBMED_20064470}}
+
-
 
+
-
==About this Structure==
+
-
[[3jza]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JZA OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:20064470</ref><ref group="xtra">PMID:17947549</ref><ref group="xtra">PMID:17952054</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]
+
[[Category: Large Structures]]
-
[[Category: Blankenfeldt, W.]]
+
[[Category: Legionella pneumophila subsp. pneumophila str. Philadelphia 1]]
-
[[Category: Goody, R S.]]
+
[[Category: Blankenfeldt W]]
-
[[Category: Itzen, A.]]
+
[[Category: Goody RS]]
-
[[Category: Oesterlin, L K.]]
+
[[Category: Itzen A]]
-
[[Category: Schoebel, S.]]
+
[[Category: Oesterlin LK]]
-
[[Category: Acetylation]]
+
[[Category: Schoebel S]]
-
[[Category: Cytoplasm]]
+
-
[[Category: Gdf]]
+
-
[[Category: Gdi]]
+
-
[[Category: Gdi displacement factor]]
+
-
[[Category: Gef]]
+
-
[[Category: Gtp-binding]]
+
-
[[Category: Lipoprotein]]
+
-
[[Category: Membrane]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Prenylation]]
+
-
[[Category: Protein transport]]
+
-
[[Category: Rabgdi]]
+
-
[[Category: Rabgef]]
+

Current revision

Crystal structure of human Rab1b in complex with the GEF domain of DrrA/SidM from Legionella pneumophila

PDB ID 3jza

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools