1yoe

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[[Image:1yoe.png|left|200px]]
 
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==Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose==
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The line below this paragraph, containing "STRUCTURE_1yoe", creates the "Structure Box" on the page.
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<StructureSection load='1yoe' size='340' side='right'caption='[[1yoe]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1yoe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YOE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YOE FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=RIB:RIBOSE'>RIB</scene></td></tr>
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{{STRUCTURE_1yoe| PDB=1yoe | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yoe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yoe OCA], [https://pdbe.org/1yoe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yoe RCSB], [https://www.ebi.ac.uk/pdbsum/1yoe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yoe ProSAT]</span></td></tr>
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</table>
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===Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose===
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== Function ==
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[https://www.uniprot.org/uniprot/RIHA_ECOLI RIHA_ECOLI] Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_15130467}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 15130467 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yo/1yoe_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_15130467}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[1yoe]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YOE OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yoe ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:15130467</ref><ref group="xtra">PMID:11292348</ref><ref group="xtra">PMID:9572842</ref><references group="xtra"/>
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Ribosylpyrimidine nucleosidase]]
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[[Category: Large Structures]]
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[[Category: Degano, M.]]
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[[Category: Degano M]]
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[[Category: Muzzolini, L.]]
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[[Category: Muzzolini L]]
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[[Category: Steyaert, J.]]
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[[Category: Steyaert J]]
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[[Category: Versees, W.]]
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[[Category: Versees W]]
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[[Category: Bacterial nucleosidase]]
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[[Category: Enzyme/product complex]]
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[[Category: Pyrimidine nucleoside hydrolase]]
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[[Category: Ribose]]
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Current revision

Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose

PDB ID 1yoe

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