2owz

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[[Image:2owz.jpg|left|200px]]<br /><applet load="2owz" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2owz, resolution 2.180&Aring;" />
 
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'''R-state, citrate and Fru-6-P-bound Escherichia coli fructose-1,6-bisphosphatase'''<br />
 
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==Overview==
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==R-state, citrate and Fru-6-P-bound Escherichia coli fructose-1,6-bisphosphatase==
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The enteric bacterium Escherichia coli requires, fructose-1,6-bisphosphatase (FBPase) for growth on gluconeogenic carbon, sources. Constitutive expression of FBPase and, fructose-6-phosphate-1-kinase coupled with the absence of futile cycling, implies an undetermined mechanism of coordinate regulation involving both, enzymes. Tricarboxylic acids and phosphorylated three-carbon carboxylic, acids, all intermediates of glycolysis and the tricarboxylic acid cycle, are shown here to activate E. coli FBPase. The two most potent activators, phosphoenolpyruvate and citrate, bind to the sulfate anion site, revealed, previously in the first crystal structure of the E. coli enzyme. Tetramers, ligated with either phosphoenolpyruvate or citrate, in contrast to the, sulfate-bound structure, are in the canonical R-state of porcine FBPase, but nevertheless retain sterically blocked AMP pockets. At physiologically, relevant concentrations, phosphoenolpyruvate and citrate stabilize an, active tetramer over a less active enzyme form of mass comparable with, that of a dimer. The above implies the conservation of the R-state through, evolution. FBPases of heterotrophic organisms of distantly related, phylogenetic groups retain residues of the allosteric activator site and, in those instances where data are available exhibit activation by, phosphoenolpyruvate. Findings here unify disparate observations regarding, bacterial FBPases, implicating a mechanism of feed-forward activation in, bacterial central metabolism.
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<StructureSection load='2owz' size='340' side='right'caption='[[2owz]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2owz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OWZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OWZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.18&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=F6P:FRUCTOSE-6-PHOSPHATE'>F6P</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2owz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2owz OCA], [https://pdbe.org/2owz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2owz RCSB], [https://www.ebi.ac.uk/pdbsum/2owz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2owz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/F16PA_ECOLI F16PA_ECOLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ow/2owz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2owz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The enteric bacterium Escherichia coli requires fructose-1,6-bisphosphatase (FBPase) for growth on gluconeogenic carbon sources. Constitutive expression of FBPase and fructose-6-phosphate-1-kinase coupled with the absence of futile cycling implies an undetermined mechanism of coordinate regulation involving both enzymes. Tricarboxylic acids and phosphorylated three-carbon carboxylic acids, all intermediates of glycolysis and the tricarboxylic acid cycle, are shown here to activate E. coli FBPase. The two most potent activators, phosphoenolpyruvate and citrate, bind to the sulfate anion site, revealed previously in the first crystal structure of the E. coli enzyme. Tetramers ligated with either phosphoenolpyruvate or citrate, in contrast to the sulfate-bound structure, are in the canonical R-state of porcine FBPase but nevertheless retain sterically blocked AMP pockets. At physiologically relevant concentrations, phosphoenolpyruvate and citrate stabilize an active tetramer over a less active enzyme form of mass comparable with that of a dimer. The above implies the conservation of the R-state through evolution. FBPases of heterotrophic organisms of distantly related phylogenetic groups retain residues of the allosteric activator site and in those instances where data are available exhibit activation by phosphoenolpyruvate. Findings here unify disparate observations regarding bacterial FBPases, implicating a mechanism of feed-forward activation in bacterial central metabolism.
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==About this Structure==
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Structures of activated fructose-1,6-bisphosphatase from Escherichia coli. Coordinate regulation of bacterial metabolism and the conservation of the R-state.,Hines JK, Fromm HJ, Honzatko RB J Biol Chem. 2007 Apr 20;282(16):11696-704. Epub 2007 Feb 21. PMID:17314096<ref>PMID:17314096</ref>
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2OWZ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=F6P:'>F6P</scene> and <scene name='pdbligand=CIT:'>CIT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Fructose-bisphosphatase Fructose-bisphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.11 3.1.3.11] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OWZ OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structures of activated fructose-1,6-bisphosphatase from Escherichia coli. Coordinate regulation of bacterial metabolism and the conservation of the R-state., Hines JK, Fromm HJ, Honzatko RB, J Biol Chem. 2007 Apr 20;282(16):11696-704. Epub 2007 Feb 21. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17314096 17314096]
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</div>
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[[Category: Escherichia coli]]
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<div class="pdbe-citations 2owz" style="background-color:#fffaf0;"></div>
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[[Category: Fructose-bisphosphatase]]
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[[Category: Single protein]]
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[[Category: Fromm, H.J.]]
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[[Category: Hines, J.K.]]
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[[Category: Honzatko, R.B.]]
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[[Category: CIT]]
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[[Category: F6P]]
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[[Category: bacteria]]
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[[Category: carbohydrate metabolism]]
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[[Category: diabetes]]
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[[Category: gluconeogenesis]]
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[[Category: glycolysis]]
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[[Category: gram-negative]]
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[[Category: protein crystallography]]
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[[Category: protein-protein interactions]]
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[[Category: proteobacteria]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 14:47:50 2008''
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==See Also==
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*[[Fructose-1%2C6-bisphosphatase 3D structures|Fructose-1%2C6-bisphosphatase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli]]
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[[Category: Large Structures]]
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[[Category: Fromm HJ]]
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[[Category: Hines JK]]
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[[Category: Honzatko RB]]

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R-state, citrate and Fru-6-P-bound Escherichia coli fructose-1,6-bisphosphatase

PDB ID 2owz

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