2xdo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:10, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2xdo.jpg|left|200px]]
 
-
<!--
+
==Structure of the Tetracycline degrading Monooxygenase TetX2 from Bacteroides thetaiotaomicron==
-
The line below this paragraph, containing "STRUCTURE_2xdo", creates the "Structure Box" on the page.
+
<StructureSection load='2xdo' size='340' side='right'caption='[[2xdo]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2xdo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XDO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2xdo| PDB=2xdo | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xdo OCA], [https://pdbe.org/2xdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xdo RCSB], [https://www.ebi.ac.uk/pdbsum/2xdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xdo ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TETX_BACT4 TETX_BACT4] An FAD-requiring monooxygenase active on tetracycline antibiotic derivatives, which leads to their inactivation (PubMed:15452119, PubMed:16128584). Hydroxylates carbon 11a of oxytetracycline and tigecycline (PubMed:15452119, PubMed:26097034). Acts on many tetracycline analogs (chlorotetracycline, demeclocycline, doxycycline, minocycline, oxytetracyclinee), probably by monooxygenization (PubMed:15452119, PubMed:16128584). Tigecycline, a new generation tetracycline antibiotic, is rendered less effective against E.coli by this monooxygenation, is much weaker at inhibiting translation in vitro and binds Mg(2+) considerably less well (PubMed:16128584, PubMed:26097034). Expression in E.coli BW25113 reduces its growth rate about 5%. The reaction probably proceeds by FAD reduction by NADPH and, second, hydroxylation of antibiotic in a ping-pong mechanism (PubMed:23236139). Degrades chlortetracycline, probably by monooxygenation (PubMed:15452119, PubMed:28481346). Slowly oxidizes anhydrotetracycline, the final substrate in tetracycline biosynthesis (PubMed:26097034).[HAMAP-Rule:MF_00845]<ref>PMID:15452119</ref> <ref>PMID:16128584</ref> <ref>PMID:23236139</ref> <ref>PMID:26097034</ref> <ref>PMID:28481346</ref>
-
===STRUCTURE OF THE TETRACYCLINE DEGRADING MONOOXYGENASE TETX2 FROM BACTEROIDES THETAIOTAOMICRON===
+
==See Also==
-
 
+
*[[Monooxygenase 3D structures|Monooxygenase 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_21402075}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 21402075 is the PubMed ID number.
+
</StructureSection>
-
-->
+
-
{{ABSTRACT_PUBMED_21402075}}
+
-
 
+
-
==About this Structure==
+
-
[[2xdo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XDO OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:21402075</ref><ref group="xtra">PMID:20445272</ref><references group="xtra"/>
+
[[Category: Bacteroides thetaiotaomicron]]
[[Category: Bacteroides thetaiotaomicron]]
-
[[Category: Hinrichs, W.]]
+
[[Category: Large Structures]]
-
[[Category: Palm, G J.]]
+
[[Category: Hinrichs W]]
-
[[Category: Volkers, G.]]
+
[[Category: Palm GJ]]
-
[[Category: Wright, G D.]]
+
[[Category: Volkers G]]
 +
[[Category: Wright GD]]

Current revision

Structure of the Tetracycline degrading Monooxygenase TetX2 from Bacteroides thetaiotaomicron

PDB ID 2xdo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools