2p9j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2p9j" size="350" color="white" frame="true" align="right" spinBox="true" caption="2p9j, resolution 2.40&Aring;" /> '''Crystal structure of...)
Current revision (08:27, 30 October 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p9j.jpg|left|200px]]<br /><applet load="2p9j" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p9j, resolution 2.40&Aring;" />
 
-
'''Crystal structure of AQ2171 from Aquifex aeolicus'''<br />
 
-
==About this Structure==
+
==Crystal structure of AQ2171 from Aquifex aeolicus==
-
2P9J is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9J OCA].
+
<StructureSection load='2p9j' size='340' side='right'caption='[[2p9j]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
[[Category: Aquifex aeolicus]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2p9j]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9J FirstGlance]. <br>
-
[[Category: Agari, Y.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
[[Category: Chen, L.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Ebihara, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9j OCA], [https://pdbe.org/2p9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9j RCSB], [https://www.ebi.ac.uk/pdbsum/2p9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9j ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9j TOPSAN]</span></td></tr>
-
[[Category: Kuramitsu, S.]]
+
</table>
-
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+
== Function ==
-
[[Category: Rose, J.P.]]
+
[https://www.uniprot.org/uniprot/O67920_AQUAE O67920_AQUAE]
-
[[Category: SECSG, Southeast.Collaboratory.for.Structural.Genomics.]]
+
== Evolutionary Conservation ==
-
[[Category: Shinkai, A.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Wang, B-C.]]
+
Check<jmol>
-
[[Category: Yang, H.]]
+
<jmolCheckbox>
-
[[Category: Yokoyama, S.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9j_consurf.spt"</scriptWhenChecked>
-
[[Category: aq2171]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: aquifex aeolicus]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: protein structure initiative]]
+
</jmolCheckbox>
-
[[Category: psi]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p9j ConSurf].
-
[[Category: riken]]
+
<div style="clear:both"></div>
-
[[Category: riken structural genomics/proteomics initiative]]
+
__TOC__
-
[[Category: rsgi]]
+
</StructureSection>
-
[[Category: secsg]]
+
[[Category: Aquifex aeolicus VF5]]
-
[[Category: southeast collaboratory for structural genomics]]
+
[[Category: Large Structures]]
-
[[Category: structural genomics]]
+
[[Category: Agari Y]]
-
 
+
[[Category: Chen L]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:07:24 2008''
+
[[Category: Ebihara A]]
 +
[[Category: Kuramitsu S]]
 +
[[Category: Rose JP]]
 +
[[Category: Shinkai A]]
 +
[[Category: Wang B-C]]
 +
[[Category: Yang H]]
 +
[[Category: Yokoyama S]]

Current revision

Crystal structure of AQ2171 from Aquifex aeolicus

PDB ID 2p9j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p9j"
Personal tools