Ribosomal protein L25

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[[Image:1dfu.png|left|200px|thumb|Crystal Structure of Ribosomal protein L25 [[1dfu]]]]
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<StructureSection load='' size='350' side='right' caption='Ribosomal protein L25 with 5S RNA fragment and Mg+2 ions, (PDB code [[1dfu]])' scene='Ribosomal_protein_L25/Cv/1'>
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{{STRUCTURE_1dfu| PDB=1dfu | SIZE=300| |right|CAPTION=Ribosomal protein L25 with RNA fragment [[1dfu]] }}
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'''Ribosomal protein L25''' (RPL25) is one of the 34 proteins which belong to the large 50S subunit of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. Yeast RPL25 binds to 26S RRNA.
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'''Ribosomal protein L25''' (RPL25) or '''general stress protein Ctc''' is one of the 34 proteins which belong to the large 50S subunit of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome<ref>PMID:9799245</ref>. Yeast RPL25 binds to 26S RRNA.
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{{TOC limit|limit=2}}
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</StructureSection>
== 3D Structures of Ribosomal protein L25 ==
== 3D Structures of Ribosomal protein L25 ==
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===RPL25===
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
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[[1b75]] – EcRPL25 - ''Escherichia coli'' – NMR<br />
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[[1dfu]] – EcRPL25 + 5S RRNA fragment<br />
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[[1d6k]] - EcRPL25 + 5S RRNA fragment - NMR
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===L25 in 50S subunit+RNA===
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[[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – TtRPL25 in 50S subunit+RNA fragments - ''Thermus thermophilus''<br />
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[[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[2wrj]], [[2wrl]], [[2wro]], [[2wrr]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47 ]], [[2v49]], [[1vsa]], [[2hgj]], [[ 2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[1giy]], [[2y0v]], [[2y0x]], [[2y0z]], [[2y11]], [[2y13]], [[2y15]], [[2y17]], [[2y19]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[2xtg]], [[2xux]], [[2xqe]] - TtRPL25 in 50S subunit+5S RRNA+23S RRNA<br />
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[[3fin]] - TtRPL25 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br />
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[[2wwq]] – EcRPL25 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA<br />
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[[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3oas]], [[3oat]], [[3ofd]], [[3og0]], [[3ofq]], [[1vt2]] - EcRPL25 in 50S subunit+5S RRNA+23S RRNA<br />
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[[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]] - EcRPL25 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br />
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[[3kcr]] - EcRPL25 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br />
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[[2zjq]], [[2zjr]] - DrRPL25 in 50S subunit+5S RRNA+23S RRNA – ''Deinococcus radiodurans''
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===L25 in 50S subunit + antibiotics===
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[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[3pio]], [[3pip]] - DrRPL25 in 50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+antibiotic<br />
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[[2qam]], [[2qao]], [[2qba]], [[2qbc]], [[2qoz]], [[2qp1]], [[3ofc]], [[3ofz]], [[3ofr]], [[3orb]] - EcRPL25 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br />
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[[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]] - TtRPL25 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br />
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[[1k73]], [[1kc8]], [[1k8a]], [[1k9m]], [[1kd1]], [[1m1k]], [[3cxc]] - HmRPL25P in 50S subunit+5S RRNA+23S RRNA+antibiotic<br />
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===L25 in 50S subunit + ribosome releasing factor (RRF)===
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[[2qbe]], [[2qbg]], [[2qbi]], [[2qbk]], [[2z4l]], [[2z4n]] - EcRPL25 in 50S subunit+5S RRNA+23S RRNA+RRF<br />
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[[2rdo]] - EcRPL25 in 50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM
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===L25 in 50S subunit + various proteins===
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[[2vhm]] - EcRPL25 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br />
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[[2j28]] - EcRPL25 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM
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===L25 in the 50S subunit===
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[[487d]] – EcRPL25 + RPL1 + RPL2 + RPL6 + RPL9 + RPL11 + RPL14 – Cryo-EM
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===L25 in the 60S subunit===
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[[3o5h]], [[3o58]] - yRPL25 in 60S subunit+5S RRNA+25S RRNA+5.8S RRNA – yeast<br />
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[[1s1i]] - yRPL25 in 60S subunit+5S RRNA+5.8S RRNA – Cryo EM<br />
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[[3jyw]] – RPL25 in 60S subunit – Cryo EM – ''Thermomyces lanuginosus''
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===L25 in large + small ribosomal subunit===
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*Ribosomal protein L25
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[[1ml5]] - EcRPL25 in 50S ribosomal subunit+30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA – EM
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**[[1b75]] – EcRPL25 - ''Escherichia coli'' – NMR<br />
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**[[1dfu]] – EcRPL25 + 5S RRNA fragment<br />
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**[[1d6k]] - EcRPL25 + 5S RRNA fragment - NMR<br />
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**[[1feu]] - RPL25 + 5S RRNA fragment – ''Thermus thermophilus''<br />
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**[[5izn]] – RPL25 - ''Vibrio vulnificus'' <br />
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===L25 in part of 80S ribosome===
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*Ribosomal protein L25 in part of 80S ribosome
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[[2ww9]], [[2wwa]] – yRPL25+RPL4+RPL17+RPL19+RPL26+RPL31+RPL34+RPL35+RPL39+25S RRNA+SSH1P+SSS1+SEB2 – Cryo EM<br />
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**[[2ww9]], [[2wwa]] – yRPL25+RPL4+RPL17+RPL19+RPL26+RPL31+RPL34+RPL35+RPL39+25S RRNA+SSH1P+SSS1+SEB2 – yeast - Cryo EM<br />
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[[2wwb]] - wRPL25+RPL4+RPL17+RPL19+RPL25+RPL26+RPL31+RPL35+RPL39+25S RRNA+5.8S RRNA+ dSEBC61 – Cryo EM
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**[[2wwb]] - wRPL25+RPL4+RPL17+RPL19+RPL25+RPL26+RPL31+RPL35+RPL39+25S RRNA+5.8S RRNA+ dSEBC61 – wheat - Cryo EM
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}}
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== References ==
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<references/>
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[[Category:Topic Page]]

Current revision

Ribosomal protein L25 with 5S RNA fragment and Mg+2 ions, (PDB code 1dfu)

Drag the structure with the mouse to rotate

3D Structures of Ribosomal protein L25

Updated on 29-September-2017

References

  1. ↑ Stoldt M, Wohnert J, Gorlach M, Brown LR. The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases. EMBO J. 1998 Nov 2;17(21):6377-84. PMID:9799245 doi:10.1093/emboj/17.21.6377

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

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