This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pli

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2pli" size="350" color="white" frame="true" align="right" spinBox="true" caption="2pli, resolution 1.70&Aring;" /> '''Crystal structure of...)
Current revision (15:26, 17 June 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pli.gif|left|200px]]<br /><applet load="2pli" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2pli, resolution 1.70&Aring;" />
 
-
'''Crystal structure of putative Mg2+ and Co2+ transporter(CorC)associated region from Neisseria meningitidis MC58'''<br />
 
-
==About this Structure==
+
==Crystal structure of putative Mg2+ and Co2+ transporter(CorC)associated region from Neisseria meningitidis MC58==
-
2PLI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis_mc58 Neisseria meningitidis mc58] with <scene name='pdbligand=ACT:'>ACT</scene>, <scene name='pdbligand=ZN:'>ZN</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLI OCA].
+
<StructureSection load='2pli' size='340' side='right'caption='[[2pli]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
[[Category: Neisseria meningitidis mc58]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2pli]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PLI FirstGlance]. <br>
-
[[Category: Duggan, E.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[Category: Gu, M.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NMB0537 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
-
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pli FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pli OCA], [https://pdbe.org/2pli PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pli RCSB], [https://www.ebi.ac.uk/pdbsum/2pli PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pli ProSAT], [https://www.topsan.org/Proteins/MCSG/2pli TOPSAN]</span></td></tr>
-
[[Category: Nocek, B.]]
+
</table>
-
[[Category: ACT]]
+
== Evolutionary Conservation ==
-
[[Category: GOL]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: ZN]]
+
Check<jmol>
-
[[Category: corc-associated region]]
+
<jmolCheckbox>
-
[[Category: mcsg]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pl/2pli_consurf.spt"</scriptWhenChecked>
-
[[Category: midwest center for structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: psi2]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pli ConSurf].
-
 
+
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:13:03 2008''
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Neimb]]
 +
[[Category: Duggan, E]]
 +
[[Category: Gu, M]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Nocek, B]]
 +
[[Category: Corc-associated region]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Crystal structure of putative Mg2+ and Co2+ transporter(CorC)associated region from Neisseria meningitidis MC58

PDB ID 2pli

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools