2d51

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2d51" size="350" color="white" frame="true" align="right" spinBox="true" caption="2d51, resolution 1.60&Aring;" /> '''Pentaketide chromone...)
Current revision (07:35, 9 October 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2d51.gif|left|200px]]<br /><applet load="2d51" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2d51, resolution 1.60&Aring;" />
 
-
'''Pentaketide chromone synthase (M207G mutant)'''<br />
 
-
==Overview==
+
==Pentaketide chromone synthase (M207G mutant)==
-
The crystal structures of a wild-type and a mutant PCS, a novel plant type, III polyketide synthase from a medicinal plant, Aloe arborescens, were, solved at 1.6 A resolution. The crystal structures revealed that the, pentaketide-producing wild-type and the octaketide-producing M207G mutant, shared almost the same overall folding, and that the large-to-small, substitution dramatically increases the volume of the, polyketide-elongation tunnel by opening a gate to two hidden pockets, behind the active site of the enzyme. The chemically inert active site, residue 207 thus controls the number of condensations of malonyl-CoA, solely depending on the steric bulk of the side chain. These findings not, only provided insight into the polyketide formation reaction, but they, also suggested strategies for the engineered biosynthesis of polyketides.
+
<StructureSection load='2d51' size='340' side='right'caption='[[2d51]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2d51]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aloe_arborescens Aloe arborescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D51 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D51 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d51 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d51 OCA], [https://pdbe.org/2d51 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d51 RCSB], [https://www.ebi.ac.uk/pdbsum/2d51 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d51 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PCS_ALOAR PCS_ALOAR] Catalyzes the iterative condensations of 5 molecules of malonyl-CoA to produce a pentaketide 5,7-dihydroxy-2-methylchromone.<ref>PMID:15686354</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d51_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d51 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The crystal structures of a wild-type and a mutant PCS, a novel plant type III polyketide synthase from a medicinal plant, Aloe arborescens, were solved at 1.6 A resolution. The crystal structures revealed that the pentaketide-producing wild-type and the octaketide-producing M207G mutant shared almost the same overall folding, and that the large-to-small substitution dramatically increases the volume of the polyketide-elongation tunnel by opening a gate to two hidden pockets behind the active site of the enzyme. The chemically inert active site residue 207 thus controls the number of condensations of malonyl-CoA, solely depending on the steric bulk of the side chain. These findings not only provided insight into the polyketide formation reaction, but they also suggested strategies for the engineered biosynthesis of polyketides.
-
==About this Structure==
+
Structural insight into chain-length control and product specificity of pentaketide chromone synthase from Aloe arborescens.,Morita H, Kondo S, Oguro S, Noguchi H, Sugio S, Abe I, Kohno T Chem Biol. 2007 Apr;14(4):359-69. PMID:17462571<ref>PMID:17462571</ref>
-
2D51 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aloe_arborescens Aloe arborescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D51 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Structural insight into chain-length control and product specificity of pentaketide chromone synthase from Aloe arborescens., Morita H, Kondo S, Oguro S, Noguchi H, Sugio S, Abe I, Kohno T, Chem Biol. 2007 Apr;14(4):359-69. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17462571 17462571]
+
</div>
 +
<div class="pdbe-citations 2d51" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Aloe arborescens]]
[[Category: Aloe arborescens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Kohno, T.]]
+
[[Category: Kohno T]]
-
[[Category: Morita, H.]]
+
[[Category: Morita H]]
-
[[Category: chalcone synthase]]
+
-
[[Category: pentaketide chromone synthase]]
+
-
[[Category: polyketide synthase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:14:27 2008''
+

Current revision

Pentaketide chromone synthase (M207G mutant)

PDB ID 2d51

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2d51"
Personal tools