2deg
From Proteopedia
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(New page: 200px<br /><applet load="2deg" size="350" color="white" frame="true" align="right" spinBox="true" caption="2deg, resolution 1.70Å" /> '''Crystal structure of...) |
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| - | [[Image:2deg.jpg|left|200px]]<br /><applet load="2deg" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2deg, resolution 1.70Å" /> | ||
| - | '''Crystal structure of tt0972 protein form Thermus Thermophilus with Mn2(+) ions'''<br /> | ||
| - | == | + | ==Crystal structure of tt0972 protein form Thermus Thermophilus with Mn2(+) ions== |
| - | + | <StructureSection load='2deg' size='340' side='right'caption='[[2deg]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| + | <table><tr><td colspan='2'>[[2deg]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEG FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2deg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2deg OCA], [https://pdbe.org/2deg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2deg RCSB], [https://www.ebi.ac.uk/pdbsum/2deg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2deg ProSAT], [https://www.topsan.org/Proteins/RSGI/2deg TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DODEC_THET8 DODEC_THET8] May function as storage protein that sequesters various flavins and other cofactors, thereby protecting the cell against undesirable reactions mediated by the free cofactors. Binds and sequesters FMN, FAD, lumiflavin and lumichrome, and can also bind coenzyme A.<ref>PMID:17855371</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2deg_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2deg ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Thermus thermophilus]] | [[Category: Thermus thermophilus]] | ||
| - | [[Category: Inagaki | + | [[Category: Inagaki E]] |
| - | [[Category: Nakano | + | [[Category: Nakano N]] |
| - | + | [[Category: Shinkai A]] | |
| - | [[Category: Shinkai | + | [[Category: Yokoyama S]] |
| - | [[Category: Yokoyama | + | |
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Current revision
Crystal structure of tt0972 protein form Thermus Thermophilus with Mn2(+) ions
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