YbgF

From Proteopedia

(Difference between revisions)

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-[[Image:YbgF.jpg|300px|left|thumb| The Structure of YbgF<ref name='Gerding'>PMID: 17233825</ref>  ]]
+<StructureSection load='2xev' size='350' side='right' scene='' caption='YbgF TPR domain complex with Zn+2 (grey) and Ca+2 (green) ions (PDB code [[2xev]])'>
-{{STRUCTURE_2xev |  PDB=2xev  |  SCENE= YbgF/Ntermygbf/1 }}
+[[Image:YbgF.jpg|200px|left|thumb| The Structure of YbgF<ref name='Gerding'>PMID: 17233825</ref>  ]]
-{{STRUCTURE_2wz7 |  PDB=2wz7  |  SCENE= YbgF/Ybgf/1 }}
+{{Clear}}
+__TOC__
 ==Structure==
-YbgF is a periplasmic protein with an N-terminal coiled coil domain (NTD) and a C-terminal tetratricopeptide domain (TPR), both of which are autonomous<ref name='Gerding'>PMID: 17233825</ref>.  As seen in the 3D structure 2WZ7, the NTD forms an elongated trimer which is connected via a flexible linker to the TPR trimer, as seen in 2XEV.  This connection can be cleaved by proteases<ref name='Krachler'>PMID: 20816983</ref>.
+'''YbgF''' is a periplasmic protein with an N-terminal coiled coil domain (NTD) and a C-terminal tetratricopeptide domain (TPR), both of which are autonomous<ref name='Gerding'>PMID: 17233825</ref>.  As seen in the <scene name='42/429024/Cv/1'>3D structure 2WZ7</scene>, the NTD forms an elongated trimer which is connected via a flexible linker to the TPR trimer, <scene name='42/429024/Cv/2'>as seen in 2XEV</scene>.  This connection can be cleaved by proteases<ref name='Krachler'>PMID: 20816983</ref>.
 ==Function==
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 Studies have shown that inactivation of the YbgF gene results in no discernible change in the activity of Tol<ref name='Walberger'>PMID: 11994151</ref>.  Therefore, replacing the protein with another would not rescue any lost function.  Future research may look into comparison of different gram negative bacteria in order to determine if the function is conserved.  One particular organism that is known to not have this domain conserved is ''Chlamydiae''<ref name='Krachler'>PMID: 20816983</ref>.  Future research may look into the functioning of its Tol system, with a the possible addition of the YbgF domain to study what effect this might have.
+==3D structures of Ybgf==
+[[2wz7]], [[2xdj]] – Ybgf N terminal – ''Escherichia coli''<br />
+[[2xev]] – Ybgf TPR domain – ''Xanthomonas campestris''
+</StructureSection>
 ==References==
 <references/>
+[[Category:Topic Page]]

Current revision

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YbgF TPR domain complex with Zn+2 (grey) and Ca+2 (green) ions (PDB code 2xev)

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The Structure of YbgF^[1]

1 Structure
2 Function
3 3D structures of Ybgf

Structure

YbgF is a periplasmic protein with an N-terminal coiled coil domain (NTD) and a C-terminal tetratricopeptide domain (TPR), both of which are autonomous^[1]. As seen in the , the NTD forms an elongated trimer which is connected via a flexible linker to the TPR trimer, . This connection can be cleaved by proteases^[2].

Function

Although YbgF is conserved in most gram-negative organisms, the exact function of this protein is still unknown. It may be involved in the late stages of cell division when the Tol complex is recruited to the area of septation, or also during invagination^[2].

It is known that YbgF interacts with the C-terminal domain of TolA during the import of Colicin A into the cytoplasm^[3]. The TPR domain in YgbF has been shown to bind to domain II in TolA, with the binding site located between residues 280-313^[1]. The NTD is not directly involved with the binding to TolA, but is important for the transition of YbgF in its oligomeric state when binding to TolA. This may be due to the NTD restricting the formation of the trimer state, allowing the TPR to bind with TolA^[2].

Studies have shown that inactivation of the YbgF gene results in no discernible change in the activity of Tol^[3]. Therefore, replacing the protein with another would not rescue any lost function. Future research may look into comparison of different gram negative bacteria in order to determine if the function is conserved. One particular organism that is known to not have this domain conserved is Chlamydiae^[2]. Future research may look into the functioning of its Tol system, with a the possible addition of the YbgF domain to study what effect this might have.

3D structures of Ybgf

2wz7, 2xdj – Ybgf N terminal – Escherichia coli
2xev – Ybgf TPR domain – Xanthomonas campestris

References

↑ ^1.0 ^1.1 ^1.2 Gerding MA, Ogata Y, Pecora ND, Niki H, de Boer PA. The trans-envelope Tol-Pal complex is part of the cell division machinery and required for proper outer-membrane invagination during cell constriction in E. coli. Mol Microbiol. 2007 Feb;63(4):1008-25. PMID:17233825 doi:10.1111/j.1365-2958.2006.05571.x
↑ ^2.0 ^2.1 ^2.2 ^2.3 Krachler AM, Sharma A, Cauldwell A, Papadakos G, Kleanthous C. TolA modulates the oligomeric status of YbgF in the bacterial periplasm. J Mol Biol. 2010 Oct 22;403(2):270-85. Epub 2010 Sep 15. PMID:20816983 doi:10.1016/j.jmb.2010.08.050
↑ ^3.0 ^3.1 Walburger A, Lazdunski C, Corda Y. The Tol/Pal system function requires an interaction between the C-terminal domain of TolA and the N-terminal domain of TolB. Mol Microbiol. 2002 May;44(3):695-708. PMID:11994151