3aai

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[[Image:3aai.png|left|200px]]
 
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==X-ray crystal structure of CsoR from Thermus thermophilus HB8==
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The line below this paragraph, containing "STRUCTURE_3aai", creates the "Structure Box" on the page.
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<StructureSection load='3aai' size='340' side='right'caption='[[3aai]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3aai]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AAI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AAI FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3aai| PDB=3aai | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aai FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aai OCA], [https://pdbe.org/3aai PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aai RCSB], [https://www.ebi.ac.uk/pdbsum/3aai PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aai ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q5SHL1_THET8 Q5SHL1_THET8]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aa/3aai_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3aai ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The TTHA1719 gene from Thermus thermophilus HB8 encodes an orthologue of the copper-sensing transcriptional repressor CsoR. X-ray crystal structure analysis of T. thermophilus CsoR indicated that it forms a homotetramer. The structures of the CsoR monomer and dimer are similar to those of Mycobacterium tuberculosis CsoR. In the absence of copper ions, T. thermophilus CsoR bound to the promoter region of the copper-sensitive operon copZ-csoR-copA, which encodes the copper chaperone CopZ, CsoR and the copper efflux P-type ATPase CopA, to repress their expression, while in the presence of approximately an equal amount of copper ion, CsoR was released from the DNA, to allow expression of the downstream genes. Both Cu(II) and Cu(I) ions could bind CsoR, and were effective for transcriptional derepression. Additionally, CsoR could also sense various other metal ions, such as Zn(II), Ag(I), Cd(II) and Ni(II), which led to transcriptional derepression. The copper-binding motif of T. thermophilus CsoR contains C-H-H, while those of most orthologues contain C-H-C. The X-ray crystal structure of T. thermophilus CsoR suggests that a histidine residue in the N-terminal domain is also involved in metal-ion binding; that is, the binding motif could be H-C-H-H, like that of Escherichia coli RcnR, which binds Ni(II)/Co(II). The non-conserved H70 residue in the metal-binding motif of T. thermophilus CsoR is important for its DNA-binding affinity and metal-ion responsiveness.
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===X-ray crystal structure of CsoR from Thermus thermophilus HB8===
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Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8.,Sakamoto K, Agari Y, Agari K, Kuramitsu S, Shinkai A Microbiology. 2010 Jul;156(Pt 7):1993-2005. Epub 2010 Apr 15. PMID:20395270<ref>PMID:20395270</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3aai" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_20395270}}, adds the Publication Abstract to the page
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*[[Copper homeostasis protein|Copper homeostasis protein]]
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(as it appears on PubMed at http://www.pubmed.gov), where 20395270 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20395270}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[3aai]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AAI OCA].
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[[Category: Thermus thermophilus HB8]]
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[[Category: Agari Y]]
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==Reference==
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[[Category: Kuramitsu S]]
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<ref group="xtra">PMID:20395270</ref><references group="xtra"/>
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[[Category: Sakamoto K]]
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[[Category: Thermus thermophilus]]
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[[Category: Shinkai A]]
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[[Category: Agari, Y.]]
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[[Category: Kuramitsu, S.]]
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[[Category: Sakamoto, K.]]
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[[Category: Shinkai, A.]]
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Current revision

X-ray crystal structure of CsoR from Thermus thermophilus HB8

PDB ID 3aai

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