2xkm

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[[Image:2xkm.png|left|200px]]
 
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==Consensus structure of Pf1 filamentous bacteriophage from X-ray fibre diffraction and solid-state NMR==
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The line below this paragraph, containing "STRUCTURE_2xkm", creates the "Structure Box" on the page.
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<StructureSection load='2xkm' size='340' side='right'caption='[[2xkm]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2xkm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_virus_Pf1 Pseudomonas virus Pf1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XKM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XKM FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Fiber diffraction , Hybrid , Solid-state NMR, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xkm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xkm OCA], [https://pdbe.org/2xkm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xkm RCSB], [https://www.ebi.ac.uk/pdbsum/2xkm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xkm ProSAT]</span></td></tr>
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{{STRUCTURE_2xkm| PDB=2xkm | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSD_BPPF1 CAPSD_BPPF1] Self assembles to form a helical capsid wrapping up the viral genomic DNA. The capsid displays a filamentous structure with a length of 760-1950 nm and a width of 6-8 nm. The virion assembly and budding take place at the host inner membrane (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Filamentous bacteriophages (filamentous bacterial viruses or Inovirus) are simple and well-characterised macromolecular assemblies that are widely used in molecular biology and biophysics, both as paradigms for studying basic biological questions and as practical tools in areas as diverse as immunology and solid-state physics. The strains fd, M13 and f1 are virtually identical filamentous phages that infect bacteria expressing F-pili, and are sometimes grouped as the Ff phages. For historical reasons fd has often been used for structural studies, but M13 and f1 are more often used for biological experiments. Many other strains have been identified that are genetically quite distinct from Ff and yet have a similar molecular structure and life cycle. One of these, Pf1, gives the highest resolution X-ray fibre diffraction patterns known for filamentous bacteriophage. These diffraction patterns have been used in the past to derive a molecular model for the structure of the phage. Solid-state NMR experiments have been used in separate studies to derive a significantly different model of Pf1. Here we combine previously published X-ray fibre diffraction data and solid-state NMR data to give a consensus structure model for Pf1 filamentous bacteriophage, and we discuss the implications of this model for assembly of the phage at the bacterial membrane.
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===CONSENSUS STRUCTURE OF PF1 FILAMENTOUS BACTERIOPHAGE FROM X-RAY FIBRE DIFFRACTION AND SOLID-STATE NMR===
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Consensus structure of Pf1 filamentous bacteriophage from X-ray fibre diffraction and solid-state NMR.,Straus SK, Scott WR, Schwieters CD, Marvin DA Eur Biophys J. 2010 Nov 17. PMID:21082179<ref>PMID:21082179</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_21082179}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2xkm" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21082179 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21082179}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2xkm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_phage_pf1 Pseudomonas phage pf1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XKM OCA].
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[[Category: Pseudomonas virus Pf1]]
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[[Category: Marvin DA]]
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==Reference==
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[[Category: P Scott WR]]
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<ref group="xtra">PMID:21082179</ref><ref group="xtra">PMID:15741342</ref><ref group="xtra">PMID:15299811</ref><ref group="xtra">PMID:18421454</ref><ref group="xtra">PMID:2489076</ref><references group="xtra"/>
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[[Category: Schwieters CD]]
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[[Category: Pseudomonas phage pf1]]
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[[Category: Straus SK]]
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[[Category: Marvin, D A.]]
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[[Category: Schwieters, C D.]]
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[[Category: Scott, W R.P.]]
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[[Category: Straus, S K.]]
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Current revision

Consensus structure of Pf1 filamentous bacteriophage from X-ray fibre diffraction and solid-state NMR

PDB ID 2xkm

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