3ajj

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[[Image:3ajj.jpg|left|200px]]
 
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==Crystal Structure of d(CGCGGATf5UCGCG): 5-Formyluridine/Guanosine Base-pair in B-DNA==
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The line below this paragraph, containing "STRUCTURE_3ajj", creates the "Structure Box" on the page.
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<StructureSection load='3ajj' size='340' side='right'caption='[[3ajj]], [[Resolution|resolution]] 3.02&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3ajj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AJJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AJJ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.02&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UFR:2-DEOXY-5-FORMYLURIDINE+5-(DIHYDROGEN+PHOSPHATE)'>UFR</scene></td></tr>
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{{STRUCTURE_3ajj| PDB=3ajj | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ajj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ajj OCA], [https://pdbe.org/3ajj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ajj RCSB], [https://www.ebi.ac.uk/pdbsum/3ajj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ajj ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hydroxyl radicals are potent mutagens that attack DNA to form various base and ribose derivatives. One of the major damaged thymine derivatives is 5-formyluracil (fU), which induces pyrimidine transition during replication. In order to establish the structural basis for such mutagenesis, the crystal structures of two kinds of DNA d(CGCGRATfUCGCG) with R = A/G have been determined by X-ray crystallography. The fU residues form a Watson-Crick-type pair with A and two types of pairs (wobble and reversed wobble) with G, the latter being a new type of base pair between ionized thymine base and guanine base. In silico structural modeling suggests that the DNA polymerase can accept the reversed wobble pair with G, as well as the Watson-Crick pair with A.
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===Crystal Structure of d(CGCGGATf5UCGCG): 5-Formyluridine/Guanosine Base-pair in B-DNA===
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Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil.,Tsunoda M, Sakaue T, Naito S, Sunami T, Abe N, Ueno Y, Matsuda A, Takenaka A J Nucleic Acids. 2010 Oct 7;2010:107289. PMID:20976303<ref>PMID:20976303</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_20976303}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3ajj" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20976303 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20976303}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[3ajj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AJJ OCA].
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[[Category: Matsuda A]]
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[[Category: Sakaue T]]
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==Reference==
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[[Category: Takenaka A]]
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<ref group="xtra">PMID:20976303</ref><references group="xtra"/>
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[[Category: Tsunoda M]]
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[[Category: Matsuda, A.]]
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[[Category: Ueno Y]]
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[[Category: Sakaue, T.]]
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[[Category: Takenaka, A.]]
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[[Category: Tsunoda, M.]]
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[[Category: Ueno, Y.]]
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Current revision

Crystal Structure of d(CGCGGATf5UCGCG): 5-Formyluridine/Guanosine Base-pair in B-DNA

PDB ID 3ajj

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