This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mmd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:56, 12 July 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3mmd.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the W241A mutant of xylanase from Geobacillus stearothermophilus T-6 (XT6) complexed with hydrolyzed xylopentaose==
-
The line below this paragraph, containing "STRUCTURE_3mmd", creates the "Structure Box" on the page.
+
<StructureSection load='3mmd' size='340' side='right'caption='[[3mmd]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mmd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MMD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_900116:4beta-beta-xylobiose'>PRD_900116</scene>, <scene name='pdbligand=PRD_900117:4beta-beta-xylotriose'>PRD_900117</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3mmd| PDB=3mmd | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mmd OCA], [https://pdbe.org/3mmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mmd RCSB], [https://www.ebi.ac.uk/pdbsum/3mmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mmd ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the W241A mutant of xylanase from Geobacillus stearothermophilus T-6 (XT6) complexed with hydrolyzed xylopentaose===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/XYN1_GEOSE XYN1_GEOSE]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[3mmd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MMD OCA].
+
-
[[Category: Endo-1,4-beta-xylanase]]
+
[[Category: Geobacillus stearothermophilus]]
[[Category: Geobacillus stearothermophilus]]
-
[[Category: Feinberg, H.]]
+
[[Category: Large Structures]]
-
[[Category: Shoham, G.]]
+
[[Category: Feinberg H]]
-
[[Category: Shoham, Y.]]
+
[[Category: Shoham G]]
-
[[Category: Solomon, V.]]
+
[[Category: Shoham Y]]
-
[[Category: Tabachnikov, O.]]
+
[[Category: Solomon V]]
-
[[Category: Zolotnitsky, G.]]
+
[[Category: Tabachnikov O]]
 +
[[Category: Zolotnitsky G]]

Current revision

Crystal structure of the W241A mutant of xylanase from Geobacillus stearothermophilus T-6 (XT6) complexed with hydrolyzed xylopentaose

PDB ID 3mmd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools