This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zku

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:05, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1zku.png|left|200px]]
 
-
<!--
+
==Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tail==
-
The line below this paragraph, containing "STRUCTURE_1zku", creates the "Structure Box" on the page.
+
<SX load='1zku' size='340' side='right' viewer='molstar' caption='[[1zku]], [[Resolution|resolution]] 15.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1zku]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZKU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 15&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
-
{{STRUCTURE_1zku| PDB=1zku | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zku OCA], [https://pdbe.org/1zku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zku RCSB], [https://www.ebi.ac.uk/pdbsum/1zku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zku ProSAT]</span></td></tr>
-
 
+
</table>
-
===Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tail===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/BP09_BPT4 BP09_BPT4] Baseplate protein that connects the long tail fibers to the baseplate and probably triggers the tail contraction after virus attachment to a host cell (PubMed:10545330). Involved in the tail assembly (PubMed:21129200).<ref>PMID:10545330</ref> <ref>PMID:21129200</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[1zku]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZKU OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zk/1zku_consurf.spt"</scriptWhenChecked>
-
<ref group="xtra">PMID:016142226</ref><ref group="xtra">PMID:016116440</ref><references group="xtra"/>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Enterobacteria phage t4]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Kostyuchenko, V A.]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zku ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</SX>
 +
[[Category: Escherichia virus T4]]
 +
[[Category: Large Structures]]
 +
[[Category: Kostyuchenko VA]]

Current revision

Fitting of the gp9 structure in the EM density of bacteriophage T4 extended tail

1zku, resolution 15.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1zku"
Personal tools