This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2aml

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2aml" size="350" color="white" frame="true" align="right" spinBox="true" caption="2aml, resolution 1.50&Aring;" /> '''Crystal structure of...)
Current revision (06:43, 25 January 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2aml.gif|left|200px]]<br /><applet load="2aml" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2aml, resolution 1.50&Aring;" />
 
-
'''Crystal structure of Lmo0035 protein (46906266) from LISTERIA MONOCYTOGENES 4b F2365 at 1.50 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of Lmo0035 protein (46906266) from LISTERIA MONOCYTOGENES 4b F2365 at 1.50 A resolution==
-
2AML is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes] with <scene name='pdbligand=ACT:'>ACT</scene>, <scene name='pdbligand=PO4:'>PO4</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AML OCA].
+
<StructureSection load='2aml' size='340' side='right'caption='[[2aml]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
[[Category: Listeria monocytogenes]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2aml]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_serotype_4b_str._F2365 Listeria monocytogenes serotype 4b str. F2365]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AML FirstGlance]. <br>
-
[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[Category: ACT]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2aml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2aml OCA], [https://pdbe.org/2aml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2aml RCSB], [https://www.ebi.ac.uk/pdbsum/2aml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2aml ProSAT], [https://www.topsan.org/Proteins/JCSG/2aml TOPSAN]</span></td></tr>
-
[[Category: GOL]]
+
</table>
-
[[Category: PO4]]
+
== Evolutionary Conservation ==
-
[[Category: 46906266]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: jcsg]]
+
Check<jmol>
-
[[Category: joint center for structural genomics]]
+
<jmolCheckbox>
-
[[Category: lmo0035 protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/am/2aml_consurf.spt"</scriptWhenChecked>
-
[[Category: protein structure initiative]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: psi]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: structural genomics]]
+
</jmolCheckbox>
-
 
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2aml ConSurf].
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 18:05:28 2008''
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Listeria monocytogenes serotype 4b str. F2365]]

Current revision

Crystal structure of Lmo0035 protein (46906266) from LISTERIA MONOCYTOGENES 4b F2365 at 1.50 A resolution

PDB ID 2aml

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools