This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2apl
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2apl" size="350" color="white" frame="true" align="right" spinBox="true" caption="2apl, resolution 2.01Å" /> '''Crystal structure of...) |
|||
| (16 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2apl.gif|left|200px]]<br /><applet load="2apl" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2apl, resolution 2.01Å" /> | ||
| - | '''Crystal structure of protein PG0816 from Porphyromonas gingivalis'''<br /> | ||
| - | == | + | ==Crystal structure of protein PG0816 from Porphyromonas gingivalis== |
| - | + | <StructureSection load='2apl' size='340' side='right'caption='[[2apl]], [[Resolution|resolution]] 2.01Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[2apl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis_W83 Porphyromonas gingivalis W83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2APL FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01Å</td></tr> |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2apl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2apl OCA], [https://pdbe.org/2apl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2apl RCSB], [https://www.ebi.ac.uk/pdbsum/2apl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2apl ProSAT], [https://www.topsan.org/Proteins/MCSG/2apl TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | [ | + | == Function == |
| - | [[Category: | + | [https://www.uniprot.org/uniprot/Q7MW33_PORGI Q7MW33_PORGI] |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2apl_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | + | </jmolCheckbox> | |
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2apl ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Porphyromonas gingivalis W83]] | ||
| + | [[Category: Chang C]] | ||
| + | [[Category: Collart F]] | ||
| + | [[Category: Joachimiak A]] | ||
| + | [[Category: Moy S]] | ||
| + | [[Category: Quartey P]] | ||
Current revision
Crystal structure of protein PG0816 from Porphyromonas gingivalis
| |||||||||||
