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3q5c

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[[Image:3q5c.jpg|left|200px]]
 
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==Crystal structure of four-way junction with sticky end==
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The line below this paragraph, containing "STRUCTURE_3q5c", creates the "Structure Box" on the page.
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<StructureSection load='3q5c' size='340' side='right'caption='[[3q5c]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.501&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [https://pdbe.org/3q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [https://www.ebi.ac.uk/pdbsum/3q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q5c ProSAT]</span></td></tr>
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{{STRUCTURE_3q5c| PDB=3q5c | SCENE= }}
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We report here the crystal structure of the partially self-complementary decameric sequence d(CGGCGGCCGC), which self assembles to form a four-way junction with sticky ends. Each junction binds to four others through Watson-Crick base pairing at the sticky ends to form a rhombic structure. The rhombuses bind to each other and form two dimensional tiles. The tiles stack to form the crystal. The crystal diffracted in the space group P1 to a resolution of 2.5A. The junction has the anti-parallel stacked-X conformation like other junction structures, though the formation of the rhombic net noticeably alters the details of the junction geometry.
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===Crystal structure of four-way junction with sticky end===
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The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice.,Venkadesh S, Mandal PK, Gautham N Biochem Biophys Res Commun. 2011 Apr 15;407(3):548-51. Epub 2011 Mar 16. PMID:21419105<ref>PMID:21419105</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 3q5c" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21419105 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21419105}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA].
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[[Category: Gautham N]]
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[[Category: Mandal PK]]
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==Reference==
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[[Category: Venkadesh S]]
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<ref group="xtra">PMID:021419105</ref><references group="xtra"/>
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[[Category: Gautham, N.]]
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[[Category: Mandal, P K.]]
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[[Category: Venkadesh, S.]]
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Current revision

Crystal structure of four-way junction with sticky end

PDB ID 3q5c

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