3bb7

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[[Image:3bb7.png|left|200px]]
 
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==Structure of Prevotella intermedia prointerpain A fragment 39-359 (mutant C154A)==
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The line below this paragraph, containing "STRUCTURE_3bb7", creates the "Structure Box" on the page.
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<StructureSection load='3bb7' size='340' side='right'caption='[[3bb7]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3bb7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Prevotella_intermedia Prevotella intermedia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BB7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BB7 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bb7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bb7 OCA], [https://pdbe.org/3bb7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bb7 RCSB], [https://www.ebi.ac.uk/pdbsum/3bb7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bb7 ProSAT]</span></td></tr>
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{{STRUCTURE_3bb7| PDB=3bb7 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A9J7N5_PREIN A9J7N5_PREIN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bb/3bb7_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bb7 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Prevotella intermedia is a major periodontopathogen contributing to human gingivitis and periodontitis. Such pathogens release proteases as virulence factors that cause deterrence of host defenses and tissue destruction. A new cysteine protease from the cysteine-histidine-dyad class, interpain A, was studied in its zymogenic and self-processed mature forms. The latter consists of a bivalved moiety made up by two subdomains. In the structure of a catalytic cysteine-to-alanine zymogen variant, the right subdomain interacts with an unusual prodomain, thus contributing to latency. Unlike the catalytic cysteine residue, already in its competent conformation in the zymogen, the catalytic histidine is swung out from its active conformation and trapped in a cage shaped by a backing helix, a zymogenic hairpin, and a latency flap in the zymogen. Dramatic rearrangement of up to 20A of these elements triggered by a tryptophan switch occurs during activation and accounts for a new activation mechanism for proteolytic enzymes. These findings can be extrapolated to related potentially pathogenic cysteine proteases such as Streprococcus pyogenes SpeB and Porphyromonas gingivalis periodontain.
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===Structure of Prevotella intermedia prointerpain A fragment 39-359 (mutant C154A)===
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A new autocatalytic activation mechanism for cysteine proteases revealed by Prevotella intermedia interpain A.,Mallorqui-Fernandez N, Manandhar SP, Mallorqui-Fernandez G, Uson I, Wawrzonek K, Kantyka T, Sola M, Thogersen IB, Enghild JJ, Potempa J, Gomis-Ruth FX J Biol Chem. 2008 Feb 1;283(5):2871-82. Epub 2007 Nov 9. PMID:17993455<ref>PMID:17993455</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_17993455}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3bb7" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 17993455 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_17993455}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[3bb7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prevotella_intermedia Prevotella intermedia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BB7 OCA].
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==Reference==
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<ref group="xtra">PMID:017993455</ref><references group="xtra"/>
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[[Category: Prevotella intermedia]]
[[Category: Prevotella intermedia]]
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[[Category: Enghild, J J.]]
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[[Category: Enghild JJ]]
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[[Category: Gomis-Ruth, F X.]]
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[[Category: Gomis-Ruth FX]]
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[[Category: Kantyka, T.]]
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[[Category: Kantyka T]]
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[[Category: Mallorqui-Fernandez, G.]]
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[[Category: Mallorqui-Fernandez G]]
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[[Category: Mallorqui-Fernandez, N.]]
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[[Category: Mallorqui-Fernandez N]]
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[[Category: Manandhar, S P.]]
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[[Category: Manandhar SP]]
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[[Category: Potempa, J.]]
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[[Category: Potempa J]]
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[[Category: Sola, M.]]
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[[Category: Sola M]]
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[[Category: Thogersen, I B.]]
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[[Category: Thogersen IB]]
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[[Category: Uson, I.]]
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[[Category: Uson I]]
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[[Category: Wawrzonek, K.]]
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[[Category: Wawrzonek K]]

Current revision

Structure of Prevotella intermedia prointerpain A fragment 39-359 (mutant C154A)

PDB ID 3bb7

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