This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2bee

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2bee" size="350" color="white" frame="true" align="right" spinBox="true" caption="2bee, resolution 2.6&Aring;" /> '''Complex Between Parom...)
Current revision (07:37, 23 August 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2bee.gif|left|200px]]<br /><applet load="2bee" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2bee, resolution 2.6&Aring;" />
 
-
'''Complex Between Paromomycin derivative JS4 and the 16S-Rrna A Site'''<br />
 
-
==About this Structure==
+
==Complex Between Paromomycin derivative JS4 and the 16S-Rrna A Site==
-
2BEE is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ] with <scene name='pdbligand=JS4:'>JS4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BEE OCA].
+
<StructureSection load='2bee' size='340' side='right'caption='[[2bee]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==Reference==
+
<table><tr><td colspan='2'>[[2bee]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BEE FirstGlance]. <br>
-
Antibacterial aminoglycosides with a modified mode of binding to the ribosomal-RNA decoding site., Francois B, Szychowski J, Adhikari SS, Pachamuthu K, Swayze EE, Griffey RH, Migawa MT, Westhof E, Hanessian S, Angew Chem Int Ed Engl. 2004 Dec 10;43(48):6735-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15593140 15593140]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
[[Category: Protein complex]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JS4:(2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3R,4R,5S)-4-(2-(3-AMINOPROPYLAMINO)ETHOXY)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R,4R,5S,6R)-3-AMINO-4,5-DIHYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-2-(HYDROXYMETHYL)-TETRAHYDROFURAN-3-YLOXY)-TETRAHYDRO-2H-PYRAN-3,4-DIOL'>JS4</scene></td></tr>
-
[[Category: Francois, B.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bee OCA], [https://pdbe.org/2bee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bee RCSB], [https://www.ebi.ac.uk/pdbsum/2bee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bee ProSAT]</span></td></tr>
-
[[Category: Westhof, E.]]
+
</table>
-
[[Category: JS4]]
+
__TOC__
-
[[Category: a site]]
+
</StructureSection>
-
[[Category: aa bulges]]
+
[[Category: Large Structures]]
-
[[Category: rna-aminoglycoside interactions]]
+
[[Category: Francois B]]
-
[[Category: uou pairs]]
+
[[Category: Westhof E]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 18:22:49 2008''
+

Current revision

Complex Between Paromomycin derivative JS4 and the 16S-Rrna A Site

PDB ID 2bee

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2bee"
Personal tools