2cb6

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(New page: 200px<br /><applet load="2cb6" size="350" color="white" frame="true" align="right" spinBox="true" caption="2cb6, resolution 3.&Aring;" /> '''CRYSTAL STRUCTURE OF T...)
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[[Image:2cb6.gif|left|200px]]<br /><applet load="2cb6" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2cb6, resolution 3.&Aring;" />
 
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'''CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE MOSQUITOCIDAL TOXIN FROM BACILLUS SPHAERICUS, MUTANT E195Q'''<br />
 
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==Overview==
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==Crystal structure of the catalytic domain of the mosquitocidal toxin from Bacillus sphaericus, mutant E195Q==
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The catalytic domain of a mosquitocidal toxin prolonged by a C-terminal 44, residue linker connecting to four ricin B-like domains was crystallized., Three crystal structures were established at resolutions between 2.5A and, 3.0A using multi-wavelength and single-wavelength anomalous X-ray, diffraction as well as molecular replacement phasing techniques. The, chainfold of the toxin fragment corresponds to those of ADP-ribosylating, enzymes. At pH 4.3 the fragment is associated in a C(7)-symmetric heptamer, in agreement with an aggregate of similar size observed by size-exclusion, chromatography. In two distinct crystal forms, the heptamers formed nearly, spherical, D(7)-symmetric tetradecamers. Another crystal form obtained at, pH 6.3 contained a recurring C(2)-symmetric tetramer, which, however, was, not stable in solution. On the basis of the common chainfold and, NAD(+)-binding site of all ADP-ribosyl transferases, the NAD(+)-binding, site of the toxin was assigned at a high confidence level. In all three, crystal forms the NAD(+) site was occupied by part of the 44 residue, linker, explaining the known inhibitory effect of this polypeptide region., The structure showed that the cleavage site for toxin activation is in a, highly mobile loop that is exposed in the monomer. Since it contains the, inhibitory linker as a crucial part of the association contact, the, observed heptamer is inactive. Moreover, the heptamer cannot be activated, by proteolysis because the activation loop is at the ring center and not, accessible for proteases. Therefore the heptamer, or possibly the, tetradecamer, seems to represent an inactive storage form of the toxin.
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<StructureSection load='2cb6' size='340' side='right'caption='[[2cb6]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2cb6]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Lysinibacillus_sphaericus Lysinibacillus sphaericus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CB6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CB6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cb6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cb6 OCA], [https://pdbe.org/2cb6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cb6 RCSB], [https://www.ebi.ac.uk/pdbsum/2cb6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cb6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q03988_LYSSH Q03988_LYSSH]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The catalytic domain of a mosquitocidal toxin prolonged by a C-terminal 44 residue linker connecting to four ricin B-like domains was crystallized. Three crystal structures were established at resolutions between 2.5A and 3.0A using multi-wavelength and single-wavelength anomalous X-ray diffraction as well as molecular replacement phasing techniques. The chainfold of the toxin fragment corresponds to those of ADP-ribosylating enzymes. At pH 4.3 the fragment is associated in a C(7)-symmetric heptamer in agreement with an aggregate of similar size observed by size-exclusion chromatography. In two distinct crystal forms, the heptamers formed nearly spherical, D(7)-symmetric tetradecamers. Another crystal form obtained at pH 6.3 contained a recurring C(2)-symmetric tetramer, which, however, was not stable in solution. On the basis of the common chainfold and NAD(+)-binding site of all ADP-ribosyl transferases, the NAD(+)-binding site of the toxin was assigned at a high confidence level. In all three crystal forms the NAD(+) site was occupied by part of the 44 residue linker, explaining the known inhibitory effect of this polypeptide region. The structure showed that the cleavage site for toxin activation is in a highly mobile loop that is exposed in the monomer. Since it contains the inhibitory linker as a crucial part of the association contact, the observed heptamer is inactive. Moreover, the heptamer cannot be activated by proteolysis because the activation loop is at the ring center and not accessible for proteases. Therefore the heptamer, or possibly the tetradecamer, seems to represent an inactive storage form of the toxin.
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==About this Structure==
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Structure of the mosquitocidal toxin from Bacillus sphaericus.,Reinert DJ, Carpusca I, Aktories K, Schulz GE J Mol Biol. 2006 Apr 7;357(4):1226-36. Epub 2006 Jan 27. PMID:16483607<ref>PMID:16483607</ref>
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2CB6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Lysinibacillus_sphaericus Lysinibacillus sphaericus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CB6 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structure of the mosquitocidal toxin from Bacillus sphaericus., Reinert DJ, Carpusca I, Aktories K, Schulz GE, J Mol Biol. 2006 Apr 7;357(4):1226-36. Epub 2006 Jan 27. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16483607 16483607]
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</div>
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<div class="pdbe-citations 2cb6" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Lysinibacillus sphaericus]]
[[Category: Lysinibacillus sphaericus]]
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[[Category: Single protein]]
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[[Category: Aktories K]]
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[[Category: Aktories, K.]]
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[[Category: Carpusca I]]
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[[Category: Carpusca, I.]]
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[[Category: Reinert DJ]]
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[[Category: Reinert, D.J.]]
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[[Category: Schulz GE]]
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[[Category: Schulz, G.E.]]
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[[Category: adp-ribosyltransferase]]
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[[Category: toxin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 18:39:53 2008''
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Current revision

Crystal structure of the catalytic domain of the mosquitocidal toxin from Bacillus sphaericus, mutant E195Q

PDB ID 2cb6

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