3ibw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ibw" [edit=sysop:move=sysop])
Current revision (05:54, 17 October 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ibw.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the ACT domain from GTP pyrophosphokinase of Chlorobium tepidum. Northeast Structural Genomics Consortium Target CtR148A==
-
The line below this paragraph, containing "STRUCTURE_3ibw", creates the "Structure Box" on the page.
+
<StructureSection load='3ibw' size='340' side='right'caption='[[3ibw]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ibw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IBW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IBW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3ibw| PDB=3ibw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ibw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ibw OCA], [https://pdbe.org/3ibw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ibw RCSB], [https://www.ebi.ac.uk/pdbsum/3ibw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ibw ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of the ACT domain from GTP pyrophosphokinase of Chlorobium tepidum. Northeast Structural Genomics Consortium Target CtR148A===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8KC80_CHLTE Q8KC80_CHLTE] In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance (By similarity).[RuleBase:RU003847]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[3ibw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlorobaculum_tepidum Chlorobaculum tepidum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IBW OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/3ibw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ibw ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Chlorobaculum tepidum]]
[[Category: Chlorobaculum tepidum]]
-
[[Category: GTP diphosphokinase]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B.]]
+
[[Category: Acton TB]]
-
[[Category: Ciccosanti,C.]]
+
[[Category: Ciccosanti C]]
-
[[Category: Everett, J K.]]
+
[[Category: Everett JK]]
-
[[Category: Hunt,J F.]]
+
[[Category: Hunt JF]]
-
[[Category: Janjua,J.]]
+
[[Category: Janjua J]]
-
[[Category: Montelione, G T.]]
+
[[Category: Montelione GT]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Nair R]]
-
[[Category: Nair, R.]]
+
[[Category: Rost B]]
-
[[Category: Rost, B.]]
+
[[Category: Seetharaman J]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Su M]]
-
[[Category: Su, M.]]
+
[[Category: Tong L]]
-
[[Category: Tong,L.]]
+
[[Category: Vorobiev S]]
-
[[Category: Vorobiev, S.]]
+
[[Category: Wang H]]
-
[[Category: Wang,H.]]
+
[[Category: Xiao R]]
-
[[Category: Xiao,R.]]
+
-
[[Category: Act domain]]
+
-
[[Category: Ctr148a]]
+
-
[[Category: Gtp pyrophosphokinase]]
+
-
[[Category: Kinase]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal Structure of the ACT domain from GTP pyrophosphokinase of Chlorobium tepidum. Northeast Structural Genomics Consortium Target CtR148A

PDB ID 3ibw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools