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3ica
From Proteopedia
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| - | [[Image:3ica.png|left|200px]] | ||
| - | + | ==The crystal structure of the beta subunit of a phenylalanyl-tRNA synthetase from Porphyromonas gingivalis W83== | |
| - | + | <StructureSection load='3ica' size='340' side='right'caption='[[3ica]], [[Resolution|resolution]] 2.44Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3ica]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_33277 Atcc 33277]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ICA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ICA FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TAM:TRIS(HYDROXYETHYL)AMINOMETHANE'>TAM</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PG_0099, pheT, Porphyromonas gingivalis ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 ATCC 33277])</td></tr> | |
| - | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phenylalanine--tRNA_ligase Phenylalanine--tRNA ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.20 6.1.1.20] </span></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ica FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ica OCA], [https://pdbe.org/3ica PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ica RCSB], [https://www.ebi.ac.uk/pdbsum/3ica PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ica ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Evolutionary Conservation == | |
| - | == | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[3ica]] is a 2 chain structure | + | Check<jmol> |
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/3ica_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ica ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Aminoacyl tRNA | + | *[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]] |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Atcc 33277]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Phenylalanine--tRNA ligase]] | [[Category: Phenylalanine--tRNA ligase]] | ||
| - | + | [[Category: Fan, Y]] | |
| - | [[Category: Fan, Y | + | [[Category: Joachimiak, A]] |
| - | [[Category: Joachimiak, A | + | [[Category: Keigher, L]] |
| - | [[Category: Keigher, L | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Sather, A]] |
| - | [[Category: Sather, A | + | |
[[Category: Aminoacyl-trna synthetase]] | [[Category: Aminoacyl-trna synthetase]] | ||
[[Category: Apc61692 1]] | [[Category: Apc61692 1]] | ||
[[Category: Atp-binding]] | [[Category: Atp-binding]] | ||
[[Category: Beta subunit]] | [[Category: Beta subunit]] | ||
| - | [[Category: Cytoplasm]] | ||
[[Category: Ligase]] | [[Category: Ligase]] | ||
[[Category: Magnesium]] | [[Category: Magnesium]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
[[Category: Metal-binding]] | [[Category: Metal-binding]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: Nucleotide-binding]] | [[Category: Nucleotide-binding]] | ||
[[Category: Phenylalanyl-trna synthetase]] | [[Category: Phenylalanyl-trna synthetase]] | ||
[[Category: Porphyromonas gingivali]] | [[Category: Porphyromonas gingivali]] | ||
[[Category: Protein biosynthesis]] | [[Category: Protein biosynthesis]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
[[Category: Rna-binding]] | [[Category: Rna-binding]] | ||
| - | [[Category: Structural genomic]] | ||
[[Category: Trna-binding]] | [[Category: Trna-binding]] | ||
Current revision
The crystal structure of the beta subunit of a phenylalanyl-tRNA synthetase from Porphyromonas gingivalis W83
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Categories: Atcc 33277 | Large Structures | Phenylalanine--tRNA ligase | Fan, Y | Joachimiak, A | Keigher, L | Structural genomic | Sather, A | Aminoacyl-trna synthetase | Apc61692 1 | Atp-binding | Beta subunit | Ligase | Magnesium | Mcsg | Metal-binding | Nucleotide-binding | Phenylalanyl-trna synthetase | Porphyromonas gingivali | Protein biosynthesis | PSI, Protein structure initiative | Rna-binding | Trna-binding
