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2d5m
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2d5m" size="350" color="white" frame="true" align="right" spinBox="true" caption="2d5m, resolution 1.05Å" /> '''Flavoredoxin of Desu...) |
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| - | [[Image:2d5m.gif|left|200px]]<br /><applet load="2d5m" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2d5m, resolution 1.05Å" /> | ||
| - | '''Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)'''<br /> | ||
| - | == | + | ==Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)== |
| - | + | <StructureSection load='2d5m' size='340' side='right'caption='[[2d5m]], [[Resolution|resolution]] 1.05Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [ | + | <table><tr><td colspan='2'>[[2d5m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'Miyazaki_F' Desulfovibrio vulgaris str. 'Miyazaki F']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5M FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05Å</td></tr> |
| - | [ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5m OCA], [https://pdbe.org/2d5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5m RCSB], [https://www.ebi.ac.uk/pdbsum/2d5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5m ProSAT]</span></td></tr> |
| - | [[Category: | + | </table> |
| - | [[Category: | + | == Function == |
| - | [[Category: | + | [https://www.uniprot.org/uniprot/Q4W5X6_DESVU Q4W5X6_DESVU] |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5m_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5m ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Desulfovibrio vulgaris str. 'Miyazaki F']] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Higuchi Y]] | ||
| + | [[Category: Shibata N]] | ||
| + | [[Category: Ueda Y]] | ||
Current revision
Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)
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