This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dch

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2dch" size="350" color="white" frame="true" align="right" spinBox="true" caption="2dch, resolution 2.06&Aring;" /> '''Crystal structure of...)
Current revision (13:47, 13 March 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dch.gif|left|200px]]<br /><applet load="2dch" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2dch, resolution 2.06&Aring;" />
 
-
'''Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I'''<br />
 
-
==About this Structure==
+
==Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I==
-
2DCH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermoproteaceae Thermoproteaceae] with <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=SO4:'>SO4</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCH OCA].
+
<StructureSection load='2dch' size='340' side='right'caption='[[2dch]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Thermoproteaceae]]
+
<table><tr><td colspan='2'>[[2dch]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoproteus Thermoproteus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCH FirstGlance]. <br>
-
[[Category: Miyano, M.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
-
[[Category: Nakayama, H.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Nomura, N.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dch FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dch OCA], [https://pdbe.org/2dch PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dch RCSB], [https://www.ebi.ac.uk/pdbsum/2dch PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dch ProSAT]</span></td></tr>
-
[[Category: Sako, Y.]]
+
</table>
-
[[Category: Shimamura, T.]]
+
== Function ==
-
[[Category: Tsuge, H.]]
+
[https://www.uniprot.org/uniprot/Q8J309_9CREN Q8J309_9CREN]
-
[[Category: CL]]
+
== Evolutionary Conservation ==
-
[[Category: SO4]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: alpha/beta fold]]
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dch_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dch ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 19:00:19 2008''
+
==See Also==
 +
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermoproteus]]
 +
[[Category: Miyano M]]
 +
[[Category: Nakayama H]]
 +
[[Category: Nomura N]]
 +
[[Category: Sako Y]]
 +
[[Category: Shimamura T]]
 +
[[Category: Tsuge H]]

Current revision

Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I

PDB ID 2dch

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2dch"
Personal tools