2y51

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[[Image:2y51.jpg|left|200px]]
 
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==Crystal structure of E167A mutant of the box pathway encoded ALDH from Burkholderia xenovorans LB400==
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The line below this paragraph, containing "STRUCTURE_2y51", creates the "Structure Box" on the page.
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<StructureSection load='2y51' size='340' side='right'caption='[[2y51]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2y51]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paraburkholderia_xenovorans_LB400 Paraburkholderia xenovorans LB400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y51 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y51 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_2y51| PDB=2y51 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y51 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y51 OCA], [https://pdbe.org/2y51 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y51 RCSB], [https://www.ebi.ac.uk/pdbsum/2y51 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y51 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q13WK4_PARXL Q13WK4_PARXL]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Oxidation of cis-3,4-dehydroadipyl-CoA semialdehyde to cis-3,4-dehydroadipyl-CoA by the aldehyde dehydrogenase, ALDH(C) (EC.1.2.1.77), is an essential step in the metabolism of benzoate in Burkholderia xenovorans LB400. In a previous study, we established a structural blueprint for this novel group of ALDH enzymes. Here, we build significantly on this initial work and propose a detailed reaction mechanism for ALDH(C) based on comprehensive structural and functional investigations of active site residues. Kinetic analyses reveal essential roles for C296 as the nucleophile and E257 as the associated general base. Structural analyses of E257Q and C296A variants suggest a dynamic charge repulsion relationship between E257 and C296 that contributes to the inherent flexibility of E257 in the native enzyme, which is further regulated by E496 and E167. A proton relay network anchored by E496 and supported by E167 and K168 serves to reset E257 for the second catalytic step. We also propose that E167, which is unique to ALDH(C) and its homologs, serves a critical role in presenting the catalytic water to the newly reset E257 such that the enzyme can proceed with deacylation and product release. Collectively, the reaction mechanism proposed for ALDH(C) promotes a greater understanding of these novel ALDH enzymes, the ALDH super-family in general, and benzoate degradation in B. xenovorans LB400.
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===CRYSTAL STRUCTURE OF E167A MUTANT OF THE BOX PATHWAY ENCODED ALDH FROM BURKHOLDERIA XENOVORANS LB400===
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Elucidating the reaction mechanism of the benzoate oxidation pathway encoded aldehyde dehydrogenase from Burkholderia xenovorans LB400.,Bains J, Leon R, Temke KG, Boulanger MJ Protein Sci. 2011 Jun;20(6):1048-59. doi: 10.1002/pro.639. Epub 2011 May, 4. PMID:21495107<ref>PMID:21495107</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2y51" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_21495107}}, adds the Publication Abstract to the page
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*[[Aldehyde dehydrogenase 3D structures|Aldehyde dehydrogenase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 21495107 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21495107}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2y51]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_xenovorans_lb400 Burkholderia xenovorans lb400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y51 OCA].
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[[Category: Paraburkholderia xenovorans LB400]]
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[[Category: Bains J]]
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==Reference==
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[[Category: Boulanger MJ]]
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<ref group="xtra">PMID:021495107</ref><references group="xtra"/>
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[[Category: Leon R]]
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[[Category: Burkholderia xenovorans lb400]]
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[[Category: Temke KG]]
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[[Category: Bains, J.]]
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[[Category: Boulanger, M J.]]
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[[Category: Leon, R.]]
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[[Category: Temke, K G.]]
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Current revision

Crystal structure of E167A mutant of the box pathway encoded ALDH from Burkholderia xenovorans LB400

PDB ID 2y51

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