This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3oqj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:18, 21 February 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3oqj.png|left|200px]]
 
-
<!--
+
==Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CAPSO==
-
The line below this paragraph, containing "STRUCTURE_3oqj", creates the "Structure Box" on the page.
+
<StructureSection load='3oqj' size='340' side='right'caption='[[3oqj]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3oqj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_licheniformis_DSM_13_=_ATCC_14580 Bacillus licheniformis DSM 13 = ATCC 14580]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OQJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OQJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.399&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3CX:(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3CX</scene></td></tr>
-
{{STRUCTURE_3oqj| PDB=3oqj | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oqj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oqj OCA], [https://pdbe.org/3oqj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oqj RCSB], [https://www.ebi.ac.uk/pdbsum/3oqj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oqj ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CAPSO===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/CDLS_BACLD CDLS_BACLD] Involved in the biosynthesis of pulcherrimin, a red extracellular pigment. It uses activated amino acids in the form of aminoacyl-tRNAs (aa-tRNAs) as substrates to catalyze the ATP-independent formation of cyclodipeptides which are intermediates in diketopiperazine (DKP) biosynthetic pathways. Catalyzes the formation of cyclo(L-Leu-L-Leu) (cLL) from L-leucyl-tRNA(Leu). Can also incorporate various nonpolar residues, such as L-phenylalanine, L-leucine and methionine, into cyclodipeptides.<ref>PMID:19430487</ref> <ref>PMID:21325056</ref>
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_21325056}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 21325056 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Bacillus licheniformis DSM 13 = ATCC 14580]]
-
{{ABSTRACT_PUBMED_21325056}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Arai T]]
-
==About this Structure==
+
[[Category: Bonnefond L]]
-
[[3oqj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_licheniformis Bacillus licheniformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OQJ OCA].
+
[[Category: Ishitani R]]
-
 
+
[[Category: Nureki O]]
-
==Reference==
+
[[Category: Suzuki T]]
-
<ref group="xtra">PMID:021325056</ref><references group="xtra"/>
+
-
[[Category: Bacillus licheniformis]]
+
-
[[Category: Arai, T.]]
+
-
[[Category: Bonnefond, L.]]
+
-
[[Category: Ishitani, R.]]
+
-
[[Category: Nureki, O.]]
+
-
[[Category: Suzuki, T.]]
+

Current revision

Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CAPSO

PDB ID 3oqj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3oqj"
Personal tools