3rrr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (02:22, 21 November 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3rrr.jpg|left|200px]]
 
-
<!--
+
==Structure of the RSV F protein in the post-fusion conformation==
-
The line below this paragraph, containing "STRUCTURE_3rrr", creates the "Structure Box" on the page.
+
<StructureSection load='3rrr' size='340' side='right'caption='[[3rrr]], [[Resolution|resolution]] 2.82&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3rrr]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Respiratory_syncytial_virus Respiratory syncytial virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RRR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RRR FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.821&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
{{STRUCTURE_3rrr| PDB=3rrr | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rrr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rrr OCA], [https://pdbe.org/3rrr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rrr RCSB], [https://www.ebi.ac.uk/pdbsum/3rrr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rrr ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q84850_HRSV Q84850_HRSV]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Respiratory syncytial virus (RSV) invades host cells via a type I fusion (F) glycoprotein that undergoes dramatic structural rearrangements during the fusion process. Neutralizing monoclonal antibodies such as 101F, palivizumab, and motavizumab, target two major antigenic sites on the RSV F glycoprotein. Structures of these sites as peptide complexes with motavizumab and 101F have been previously determined, but a structure of the trimeric RSV F glycoprotein ectodomain has remained elusive. To address this issue, we undertook structural and biophysical studies on stable ectodomain constructs. Here we present the 2.8 A crystal structure of the trimeric RSV F ectodomain in its post-fusion conformation. The structure revealed that the 101F and motavizumab epitopes are present in the post-fusion state, and that their conformations are similar to those observed in the antibody-bound peptide structures. Both antibodies bound the post-fusion F glycoprotein with high affinity in surface plasmon resonance experiments. Modeling of the antibodies bound to the F glycoprotein predicts that the 101F epitope is larger than the linear peptide and restricted to a single protomer in the trimer, whereas motavizumab likely contacts residues on two protomers, indicating a quaternary epitope. Mechanistically, these results suggest that 101F and motavizumab can bind to multiple conformations of the fusion glycoprotein, and neutralize late in the fusion process. The structural preservation of neutralizing epitopes in the post-fusion state suggests that this conformation can elicit neutralizing antibodies and serve as a useful vaccine antigen.
-
===Structure of the RSV F protein in the post-fusion conformation===
+
Structure of the Respiratory Syncytial Virus Fusion Glycoprotein in the Post-fusion Conformation Reveals Preservation of Neutralizing Epitopes.,McLellan JS, Yang Y, Graham BS, Kwong PD J Virol. 2011 May 25. PMID:21613394<ref>PMID:21613394</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_21613394}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 3rrr" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21613394 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_21613394}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[3rrr]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_respiratory_syncytial_virus Human respiratory syncytial virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RRR OCA].
+
[[Category: Respiratory syncytial virus]]
-
 
+
[[Category: Graham BS]]
-
==Reference==
+
[[Category: Kwong PD]]
-
<ref group="xtra">PMID:021613394</ref><references group="xtra"/>
+
[[Category: McLellan JS]]
-
[[Category: Human respiratory syncytial virus]]
+
[[Category: Yongping Y]]
-
[[Category: Graham, B S.]]
+
-
[[Category: Kwong, P D.]]
+
-
[[Category: McLellan, J S.]]
+
-
[[Category: Yongping, Y.]]
+

Current revision

Structure of the RSV F protein in the post-fusion conformation

PDB ID 3rrr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools