2wkb

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[[Image:2wkb.png|left|200px]]
 
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==Crystal Structure of Macrophage Migration Inhibitory Factor from Plasmodium berghei==
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The line below this paragraph, containing "STRUCTURE_2wkb", creates the "Structure Box" on the page.
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<StructureSection load='2wkb' size='340' side='right'caption='[[2wkb]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2wkb]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_berghei_ANKA Plasmodium berghei ANKA]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WKB FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_2wkb| PDB=2wkb | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wkb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wkb OCA], [https://pdbe.org/2wkb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wkb RCSB], [https://www.ebi.ac.uk/pdbsum/2wkb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wkb ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wk/2wkb_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wkb ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Malaria, caused by Plasmodium falciparum and related parasites, is responsible for millions of deaths each year, mainly from complications arising from the blood stages of its life cycle. Macrophage migration inhibitory factor (MIF), a protein expressed by the parasite during these stages, has been characterized in mammals as a cytokine involved in a broad spectrum of immune responses. It also possesses two catalytic activites; a tautomerase and an oxidoreductase, though the physiological significance of neither reaction is known. Here, we have determined the crystal structure of MIF from two malaria parasites, Plasmodium falciparumand Plasmodium bergheiat 2.2 A and 1.8 A, respectively. The structures have an alpha/beta fold and each reveals a trimer, in agreement with the results of analytical ultracentrifugation. We observed open and closed active sites, these being distinguished by movements of proline-1, the catalytic base in the tautomerase reaction. These states correlate with the covalent modification of cysteine 2 to form a mercaptoethanol adduct, an observation confirmed by mass spectrometry. The Plasmodium MIFs have a different pattern of conserved cysteine residues to the mammalian MIFs and the side chain of Cys58, which is implicated in the oxidoreductase activity, is buried. This observation and the evident redox reactivity of Cys2 suggest quite different oxidoreductase characteristics. Finally we show in pull-down assays that Plasmodium MIF binds to the cell surface receptor CD74, a known mammalian MIF receptor implying that parasite MIF has the ability to interfere with, or modulate, host MIF activity through a competitive binding mechanism. (c) 2009 The Protein Society.
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===CRYSTAL STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR FROM PLASMODIUM BERGHEI===
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The crystal structures of macrophage migration inhibition factor (MIF) from Plasmodium falciparum and Plasmodium berghei.,Dobson SE, Augustijn KD, Brannigan JA, Schnick C, Janse CJ, Dodson EJ, Waters AP, Wilkinson AJ Protein Sci. 2009 Oct 13. PMID:19827093<ref>PMID:19827093</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2wkb" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19827093}}, adds the Publication Abstract to the page
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*[[Macrophage inhibitory factor 3D structures|Macrophage inhibitory factor 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19827093 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19827093}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2wkb]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Plasmodium_berghei Plasmodium berghei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WKB OCA].
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[[Category: Plasmodium berghei ANKA]]
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[[Category: Augustijn KD]]
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==Reference==
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[[Category: Brannigan JA]]
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<ref group="xtra">PMID:019827093</ref><references group="xtra"/>
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[[Category: Dobson SE]]
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[[Category: Plasmodium berghei]]
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[[Category: Dodson EJ]]
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[[Category: Augustijn, K D.]]
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[[Category: Waters AP]]
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[[Category: Brannigan, J A.]]
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[[Category: Wilkinson AJ]]
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[[Category: Dobson, S E.]]
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[[Category: Dodson, E J.]]
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[[Category: Waters, A P.]]
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[[Category: Wilkinson, A J.]]
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[[Category: Cytokine]]
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Current revision

Crystal Structure of Macrophage Migration Inhibitory Factor from Plasmodium berghei

PDB ID 2wkb

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