This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ess

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2ess" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ess, resolution 1.900&Aring;" /> '''Crystal structure o...)
Current revision (06:43, 25 January 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ess.gif|left|200px]]<br /><applet load="2ess" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ess, resolution 1.900&Aring;" />
 
-
'''Crystal structure of an acyl-ACP thioesterase (NP_810988.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.90 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of an acyl-ACP thioesterase (NP_810988.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.90 A resolution==
-
2ESS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=MPD:'>MPD</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ESS OCA].
+
<StructureSection load='2ess' size='340' side='right'caption='[[2ess]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Bacteria]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2ess]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_VPI-5482 Bacteroides thetaiotaomicron VPI-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ESS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ESS FirstGlance]. <br>
-
[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: CA]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ess FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ess OCA], [https://pdbe.org/2ess PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ess RCSB], [https://www.ebi.ac.uk/pdbsum/2ess PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ess ProSAT], [https://www.topsan.org/Proteins/JCSG/2ess TOPSAN]</span></td></tr>
-
[[Category: CL]]
+
</table>
-
[[Category: MPD]]
+
== Function ==
-
[[Category: acyl-acp thioesterase]]
+
[https://www.uniprot.org/uniprot/Q8A611_BACTN Q8A611_BACTN]
-
[[Category: jcsg]]
+
== Evolutionary Conservation ==
-
[[Category: joint center for structural genomics]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: np_810988.1]]
+
Check<jmol>
-
[[Category: protein structure initiative]]
+
<jmolCheckbox>
-
[[Category: psi]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/es/2ess_consurf.spt"</scriptWhenChecked>
-
[[Category: structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ess ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 19:20:18 2008''
+
==See Also==
 +
*[[Thioesterase 3D structures|Thioesterase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacteroides thetaiotaomicron VPI-5482]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of an acyl-ACP thioesterase (NP_810988.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.90 A resolution

PDB ID 2ess

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools