2esy
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2esy" size="350" color="white" frame="true" align="right" spinBox="true" caption="2esy" /> '''Structure and influence on stability and act...) |
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- | [[Image:2esy.gif|left|200px]]<br /><applet load="2esy" size="350" color="white" frame="true" align="right" spinBox="true" | ||
- | caption="2esy" /> | ||
- | '''Structure and influence on stability and activity of the N-terminal propetide part of lung surfactant protein C'''<br /> | ||
- | == | + | ==Structure and influence on stability and activity of the N-terminal propetide part of lung surfactant protein C== |
- | Mature lung surfactant protein C (SP-C) corresponds to residues 24-58 of | + | <StructureSection load='2esy' size='340' side='right'caption='[[2esy]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> |
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[2esy]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ESY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ESY FirstGlance]. <br> | ||
+ | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2esy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2esy OCA], [https://pdbe.org/2esy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2esy RCSB], [https://www.ebi.ac.uk/pdbsum/2esy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2esy ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/es/2esy_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2esy ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Mature lung surfactant protein C (SP-C) corresponds to residues 24-58 of the 21 kDa proSP-C. A late processing intermediate, SP-Ci, corresponding to residues 12-58 of proSP-C, lacks the surface activity of SP-C, and the SP-Ci alpha-helical structure does not unfold in contrast to the metastable nature of the SP-C helix. The NMR structure of an analogue of SP-Ci, SP-Ci(1-31), with two palmitoylCys replaced by Phe and four Val replaced by Leu, in dodecylphosphocholine micelles and in ethanol shows that its alpha-helix vs. that of SP-C is extended N-terminally. The Arg-Phe part in SP-Ci that is cleaved to generate SP-C is localized in a turn structure, which is followed by a short segment in extended conformation. Circular dichroism spectroscopy of SP-Ci(1-31) in microsomal or surfactant lipids shows a mixture of helical and extended conformation at pH 6, and a shift to more unordered structure at pH 5. Replacement of the N-terminal hexapeptide segment SPPDYS (known to constitute a signal in intracellular targeting) of SP-Ci with AAAAAA results in a peptide that is mainly unstructured, independent of pH, in microsomal and surfactant lipids. Addition of a synthetic dodecapeptide, corresponding to the propeptide part of SP-Ci, to mature SP-C results in slower aggregation kinetics and altered amyloid fibril formation, and reduces the surface activity of phospholipid-bound SP-C. These data suggest that the propeptide part of SP-Ci prevents unfolding by locking the N-terminal part of the helix, and that acidic pH results in structural disordering of the region that is proteolytically cleaved to generate SP-C. | ||
- | + | Structure and influence on stability and activity of the N-terminal propeptide part of lung surfactant protein C.,Li J, Liepinsh E, Almlen A, Thyberg J, Curstedt T, Jornvall H, Johansson J FEBS J. 2006 Mar;273(5):926-35. PMID:16478467<ref>PMID:16478467</ref> | |
- | + | ||
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | [[Category: | + | <div class="pdbe-citations 2esy" style="background-color:#fffaf0;"></div> |
- | [[Category: Almlen, A | + | == References == |
- | [[Category: Curstedt, T | + | <references/> |
- | [[Category: Johansson, J | + | __TOC__ |
- | [[Category: Jornvall, H | + | </StructureSection> |
- | [[Category: Li, J | + | [[Category: Large Structures]] |
- | [[Category: Liepinsh, E | + | [[Category: Almlen, A]] |
- | [[Category: Thyberg, J | + | [[Category: Curstedt, T]] |
- | [[Category: | + | [[Category: Johansson, J]] |
- | [[Category: | + | [[Category: Jornvall, H]] |
- | + | [[Category: Li, J]] | |
- | + | [[Category: Liepinsh, E]] | |
+ | [[Category: Thyberg, J]] | ||
+ | [[Category: Lipid binding protein]] | ||
+ | [[Category: N-terminal part of lung surfactant protein c]] |
Current revision
Structure and influence on stability and activity of the N-terminal propetide part of lung surfactant protein C
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