3rur

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[[Image:3rur.png|left|200px]]
 
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==Staphylococcus aureus heme-bound selenomethionine-labeled IsdB-N2==
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The line below this paragraph, containing "STRUCTURE_3rur", creates the "Structure Box" on the page.
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<StructureSection load='3rur' size='340' side='right'caption='[[3rur]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3rur]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RUR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RUR FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_3rur| PDB=3rur | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rur OCA], [https://pdbe.org/3rur PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rur RCSB], [https://www.ebi.ac.uk/pdbsum/3rur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rur ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ISDB_STAAN ISDB_STAAN] Seems to function as the primary receptor for hemoglobin since its inactivation inhibits the ability of S.aureus to bind hemoglobin. Binds hemoglobin in a dose-dependent way. Required for S.aureus growth using hemoglobin as the sole iron source. Also required for virulence. IsdA and/or IsdB promote resistance to hydrogen peroxide and killing by neutrophils (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Iron is an essential requirement for life for nearly all organisms. The human pathogen Staphylococcus aureus is able to acquire iron from the heme cofactor of hemoglobin (Hb) released from lysed erythrocytes. IsdB, the predominant Hb receptor of S. aureus, is a cell wall-anchored protein that is composed of two NEAT domains. The N-terminal NEAT domain (IsdB-N1) binds Hb, and the C-terminal NEAT domain (IsdB-N2) relays heme to IsdA for transport into the cell. Here we present the 1.45 A resolution X-ray crystal structure of the IsdB-N2-heme complex. While the structure largely conforms to the eight-strand beta-sandwich fold seen in other NEAT domains such as IsdA-N and uses a conserved Tyr residue to coordinate heme-iron, a Met residue is also involved in iron coordination, resulting in a novel Tyr-Met hexacoordinate heme-iron state. The kinetics of the transfer of heme from IsdB-N2 to IsdA-N can be modeled as a two-step process. The rate of transfer of heme between the isolated NEAT domains (82 s(-1)) was found to be similar to that measured for the full-length proteins. Replacing the iron coordinating Met with Leu did not abrogate high-affinity heme binding but did reduce the heme transfer rate constant by more than half. This unusual Met-Tyr heme coordination may also bestow properties on IsdB that help it to bind heme in different oxidation states or extract heme from hemoglobin.
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===Staphylococcus aureus heme-bound selenomethionine-labeled IsdB-N2===
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Unique Heme-Iron Coordination by the Hemoglobin Receptor IsdB of Staphylococcus aureus.,Gaudin CF, Grigg JC, Arrieta AL, Murphy ME Biochemistry. 2011 Jun 21;50(24):5443-5452. Epub 2011 May 26. PMID:21574663<ref>PMID:21574663</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_21574663}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3rur" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21574663 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21574663}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[3rur]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RUR OCA].
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[[Category: Staphylococcus aureus subsp. aureus N315]]
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[[Category: Arrieta AL]]
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==Reference==
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[[Category: Gaudin CFM]]
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<ref group="xtra">PMID:021574663</ref><references group="xtra"/>
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[[Category: Grigg JC]]
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[[Category: Staphylococcus aureus subsp. aureus]]
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[[Category: Murphy MEP]]
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[[Category: Arrieta, A L.]]
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[[Category: Gaudin, C F.M.]]
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[[Category: Grigg, J C.]]
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[[Category: Murphy, M E.P.]]
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[[Category: Cell wall]]
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[[Category: Heme binding]]
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[[Category: Heme protein]]
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[[Category: Heme uptake]]
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[[Category: Metal transport]]
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[[Category: Neat domain]]
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Current revision

Staphylococcus aureus heme-bound selenomethionine-labeled IsdB-N2

PDB ID 3rur

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