3ma7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:10, 6 November 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ma7.png|left|200px]]
 
-
<!--
+
==Crystal structure of Cardiolipin bound to mouse CD1D==
-
The line below this paragraph, containing "STRUCTURE_3ma7", creates the "Structure Box" on the page.
+
<StructureSection load='3ma7' size='340' side='right'caption='[[3ma7]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ma7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MA7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MA7 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.29&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD4:(2R,5R,11R,14R)-5,8,11-TRIHYDROXY-5,11-DIOXIDO-17-OXO-2,14-BIS(TETRADECANOYLOXY)-4,6,10,12,16-PENTAOXA-5,11-DIPHOSPHATRIACONT-1-YL+TETRADECANOATE'>CD4</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
-
{{STRUCTURE_3ma7| PDB=3ma7 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ma7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ma7 OCA], [https://pdbe.org/3ma7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ma7 RCSB], [https://www.ebi.ac.uk/pdbsum/3ma7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ma7 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CD1D1_MOUSE CD1D1_MOUSE] Antigen-presenting protein that binds self and non-self glycolipids and presents them to T-cell receptors on natural killer T-cells.<ref>PMID:11754812</ref> <ref>PMID:16314439</ref> <ref>PMID:16007091</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Cardiolipin (CL), a major phospholipid in bacterial cell walls, is sequestered from the immune system in mammalian mitochondria and is, therefore, a potential danger signal. Based on growing evidence that phospholipids constitute natural ligands for CD1 and that CD1d-restricted T cells recognize phospholipids, we hypothesized that CD1d binds and presents CL and that T cells in the normal immune repertoire respond to CL in a CD1d-restricted manner. We determined the murine CD1d-CL crystal structure at 2.3 A resolution and established through additional lipid loading experiments that CL, a tetra-acylated phospholipid, binds to murine CD1d with two alkyl chains buried inside the CD1d binding groove and the remaining two exposed into the solvent. We furthermore demonstrate the functional stimulatory activity of CL, showing that splenic and hepatic gammadelta T cells from healthy mice proliferate in vitro in response to mammalian or bacterial CL in a dose-dependent and CD1d-restricted manner, rapidly secreting the cytokines IFN-gamma and RANTES. Finally, we show that hepatic gammadelta T cells are activated in vivo by CD1d-bearing dendritic cells that have been pulsed with CL, but not phosphatidylcholine. Together, these findings demonstrate that CD1d is able to bind and present CL to a subset of CL-responsive gammadelta T cells that exist in the spleen and liver of healthy mice and suggest that these cells could play a role in host responses to bacterial lipids and, potentially, self-CL. We propose that CL-responsive gammadelta T cells play a role in immune surveillance during infection and tissue injury.
-
===Crystal structure of Cardiolipin bound to mouse CD1D===
+
Cardiolipin Binds to CD1d and Stimulates CD1d-Restricted {gamma}{delta} T Cells in the Normal Murine Repertoire.,Dieude M, Striegl H, Tyznik AJ, Wang J, Behar SM, Piccirillo CA, Levine JS, Zajonc DM, Rauch J J Immunol. 2011 Apr 15;186(8):4771-81. Epub 2011 Mar 9. PMID:21389252<ref>PMID:21389252</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3ma7" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_21389252}}, adds the Publication Abstract to the page
+
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 21389252 is the PubMed ID number.
+
*[[CD1|CD1]]
-
-->
+
== References ==
-
{{ABSTRACT_PUBMED_21389252}}
+
<references/>
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[3ma7]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MA7 OCA].
+
[[Category: Large Structures]]
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:021389252</ref><references group="xtra"/>
+
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Spodoptera frugiperda]]
+
[[Category: Zajonc DM]]
-
[[Category: Zajonc, D M.]]
+
-
[[Category: Cd1]]
+
-
[[Category: Cell membrane]]
+
-
[[Category: Disulfide bond]]
+
-
[[Category: Endosome]]
+
-
[[Category: Gamma delta t cell]]
+
-
[[Category: Glycolipid presentation]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Immune response]]
+
-
[[Category: Immune system]]
+
-
[[Category: Immunity]]
+
-
[[Category: Immunoglobulin domain]]
+
-
[[Category: Innate immunity]]
+
-
[[Category: Lysosome]]
+
-
[[Category: Membrane]]
+
-
[[Category: Mhc]]
+
-
[[Category: Mhc i]]
+
-
[[Category: Secreted]]
+
-
[[Category: Transmembrane]]
+

Current revision

Crystal structure of Cardiolipin bound to mouse CD1D

PDB ID 3ma7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools