3zrg
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3zrg is ON HOLD Authors: King, S.R.F., Boutemy, L.S., Win, J., Hughes, R.K., Clarke, T.A., Blumenschein, T.M.A., Kamoun, S., Banfield, M.J. Descrip...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of RxLR effector PexRD2 from Phytophthora infestans== | |
| + | <StructureSection load='3zrg' size='340' side='right'caption='[[3zrg]], [[Resolution|resolution]] 1.75Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3zrg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phytophthora_infestans Phytophthora infestans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZRG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZRG FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zrg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zrg OCA], [https://pdbe.org/3zrg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zrg RCSB], [https://www.ebi.ac.uk/pdbsum/3zrg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zrg ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/RD2_PHYIT RD2_PHYIT] Effector that enhances P.infestans colonization of Nicotiana benthamiana leaves (PubMed:24632534, PubMed:30329083). Induces a weak Cell death response in N. benthamiana. PexRD2-induced cell death is dependent on SGT1, suggesting that PexRD2 is recognized by the plant immune system (PubMed:19794118). Interacts with the kinase domain of the host MAPKKK epsilon, a positive regulator of cell death associated with plant immunity, and perturbs signaling pathways triggered by MAPKKK epsilon (PubMed:24632534, PubMed:28386988).<ref>PMID:19794118</ref> <ref>PMID:24632534</ref> <ref>PMID:28386988</ref> <ref>PMID:30329083</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Phytopathogens deliver effector proteins inside host plant cells to promote infection. These proteins can also be sensed by the plant immune system, leading to restriction of pathogen growth. Effector genes can display signatures of positive selection and rapid evolution, presumably a consequence of their co-evolutionary arms race with plants. The molecular mechanisms underlying how effectors evolve to gain new virulence functions and/or evade the plant immune system are poorly understood. Here, we report the crystal structures of the effector domains from two oomycete RXLR proteins, Phytophthora capsici AVR3a11 and Phytophthora infestans PexRD2. Despite sharing <20% sequence identity in their effector domains, they display a conserved core alpha-helical fold. Bioinformatic analyses suggest that the core fold occurs in approximately 44% of annotated Phytophthora RXLR effectors, both as a single domain and in tandem repeats of up to 11 units. Functionally important and polymorphic residues map to the surface of the structures, and PexRD2, but not AVR3a11, oligomerizes in planta. We conclude that the core alpha-helical fold enables functional adaptation of these fast evolving effectors through (i) insertion/deletions in loop regions between alpha-helices, (ii) extensions to the N and C termini, (iii) amino acid replacements in surface residues, (iv) tandem domain duplications, and (v) oligomerization. We hypothesize that the molecular stability provided by this core fold, combined with considerable potential for plasticity, underlies the evolution of effectors that maintain their virulence activities while evading recognition by the plant immune system. | ||
| - | + | Structures of Phytophthora RXLR Effector Proteins: A CONSERVED BUT ADAPTABLE FOLD UNDERPINS FUNCTIONAL DIVERSITY.,Boutemy LS, King SR, Win J, Hughes RK, Clarke TA, Blumenschein TM, Kamoun S, Banfield MJ J Biol Chem. 2011 Oct 14;286(41):35834-42. Epub 2011 Aug 3. PMID:21813644<ref>PMID:21813644</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| + | </div> | ||
| + | <div class="pdbe-citations 3zrg" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Phytophthora infestans]] | ||
| + | [[Category: Banfield MJ]] | ||
| + | [[Category: Blumenschein TMA]] | ||
| + | [[Category: Boutemy LS]] | ||
| + | [[Category: Clarke TA]] | ||
| + | [[Category: Hughes RK]] | ||
| + | [[Category: Kamoun S]] | ||
| + | [[Category: King SRF]] | ||
| + | [[Category: Win J]] | ||
Current revision
Crystal structure of RxLR effector PexRD2 from Phytophthora infestans
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