2fq2

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(New page: 200px<br /><applet load="2fq2" size="350" color="white" frame="true" align="right" spinBox="true" caption="2fq2" /> '''Solution structure of minor conformation of ...)
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[[Image:2fq2.gif|left|200px]]<br /><applet load="2fq2" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2fq2" />
 
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'''Solution structure of minor conformation of holo-acyl carrier protein from malaria parasite plasmodium falciparum'''<br />
 
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==Overview==
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==Solution structure of minor conformation of holo-acyl carrier protein from malaria parasite plasmodium falciparum==
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Acyl Carrier Protein (ACP) from the malaria parasite, Plasmodium, falciparum (PfACP) in its holo form is found to exist in two, conformational states in solution. Unique 3D solution structures of, holo-PfACP have been determined for both equilibrium conformations, using, high-resolution NMR methods. Twenty high-resolution solution structures, for each of the two forms of holo-PfACP have been determined on the basis, of 1226 and 1218 unambiguously assigned NOEs (including NOEs between, 4'-phosphopantetheine prosthetic group (4'-PP) and protein), 55 backbone, dihedral angles and 26 hydrogen bonds. The atomic rmsd values of the, determined structures of two equilibrium forms, about the mean coordinates, of the backbone and heavy atoms, are 0.48 +/- 0.09 and 0.92 +/- 0.10 and, 0.49 +/- 0.08 and 0.97 +/- 0.11 A, respectively. The interaction of 4'-PP, with the polypeptide backbone is reported here for the first time for any, of the ACPs. The structures of holo-PfACP consist of three well-defined, helices that are tightly packed. The structured regions of the molecule, are stabilized by extensive hydrophobic interactions. The difference, between the two forms arises from a reorientation of the 4'-PP group. The, enthalpy difference between the two forms, although small, implies that a, conformational switch is essential for the activation of holo-ACP., Sequence and structures of holo-PfACP have been compared with those of the, ACPs from type I and type II fatty acid biosynthesis pathways (FAS), in, particular with the ACP from rat and the butyryl-ACP from E. coli. The, PfACP structure, thus determined has several novel features hitherto not, seen in other ACPs.
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<StructureSection load='2fq2' size='340' side='right'caption='[[2fq2]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2fq2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plaf7 Plaf7]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FQ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FQ2 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PNS:4-PHOSPHOPANTETHEINE'>PNS</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2bar|2bar]], [[2fq0|2fq0]]</div></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">malaria parasite P. falciparum ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36329 PLAF7])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fq2 OCA], [https://pdbe.org/2fq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fq2 RCSB], [https://www.ebi.ac.uk/pdbsum/2fq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fq2 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/O77077_PLAFA O77077_PLAFA]] Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity).[RuleBase:RU000722]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fq/2fq2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fq2 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Acyl Carrier Protein (ACP) from the malaria parasite, Plasmodium falciparum (PfACP) in its holo form is found to exist in two conformational states in solution. Unique 3D solution structures of holo-PfACP have been determined for both equilibrium conformations, using high-resolution NMR methods. Twenty high-resolution solution structures for each of the two forms of holo-PfACP have been determined on the basis of 1226 and 1218 unambiguously assigned NOEs (including NOEs between 4'-phosphopantetheine prosthetic group (4'-PP) and protein), 55 backbone dihedral angles and 26 hydrogen bonds. The atomic rmsd values of the determined structures of two equilibrium forms, about the mean coordinates of the backbone and heavy atoms, are 0.48 +/- 0.09 and 0.92 +/- 0.10 and 0.49 +/- 0.08 and 0.97 +/- 0.11 A, respectively. The interaction of 4'-PP with the polypeptide backbone is reported here for the first time for any of the ACPs. The structures of holo-PfACP consist of three well-defined helices that are tightly packed. The structured regions of the molecule are stabilized by extensive hydrophobic interactions. The difference between the two forms arises from a reorientation of the 4'-PP group. The enthalpy difference between the two forms, although small, implies that a conformational switch is essential for the activation of holo-ACP. Sequence and structures of holo-PfACP have been compared with those of the ACPs from type I and type II fatty acid biosynthesis pathways (FAS), in particular with the ACP from rat and the butyryl-ACP from E. coli. The PfACP structure, thus determined has several novel features hitherto not seen in other ACPs.
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==About this Structure==
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Solution structures of conformationally equilibrium forms of holo-acyl carrier protein (PfACP) from Plasmodium falciparum provides insight into the mechanism of activation of ACPs.,Sharma AK, Sharma SK, Surolia A, Surolia N, Sarma SP Biochemistry. 2006 Jun 6;45(22):6904-16. PMID:16734426<ref>PMID:16734426</ref>
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2FQ2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum] with <scene name='pdbligand=PNS:'>PNS</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FQ2 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Solution structures of conformationally equilibrium forms of holo-acyl carrier protein (PfACP) from Plasmodium falciparum provides insight into the mechanism of activation of ACPs., Sharma AK, Sharma SK, Surolia A, Surolia N, Sarma SP, Biochemistry. 2006 Jun 6;45(22):6904-16. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16734426 16734426]
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</div>
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[[Category: Plasmodium falciparum]]
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<div class="pdbe-citations 2fq2" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Sarma, S.P.]]
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[[Category: Sharma, A.K.]]
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[[Category: Sharma, S.K.]]
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[[Category: Surolia, A.]]
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[[Category: Surolia, N.]]
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[[Category: PNS]]
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[[Category: 4'-phosphopantetheine]]
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[[Category: pfacp]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 19:42:16 2008''
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==See Also==
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*[[Acyl carrier protein 3D structures|Acyl carrier protein 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Plaf7]]
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[[Category: Sarma, S P]]
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[[Category: Sharma, A K]]
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[[Category: Sharma, S K]]
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[[Category: Surolia, A]]
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[[Category: Surolia, N]]
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[[Category: 4'-phosphopantetheine]]
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[[Category: Lipid transport]]
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[[Category: Pfacp]]

Current revision

Solution structure of minor conformation of holo-acyl carrier protein from malaria parasite plasmodium falciparum

PDB ID 2fq2

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