3rft

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:54, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3rft.png|left|200px]]
 
-
<!--
+
==Crystal structure of uronate dehydrogenase from Agrobacterium tumefaciens==
-
The line below this paragraph, containing "STRUCTURE_3rft", creates the "Structure Box" on the page.
+
<StructureSection load='3rft' size='340' side='right'caption='[[3rft]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3rft]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RFT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RFT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3rft| PDB=3rft | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rft FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rft OCA], [https://pdbe.org/3rft PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rft RCSB], [https://www.ebi.ac.uk/pdbsum/3rft PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rft ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of uronate dehydrogenase from Agrobacterium tumefaciens===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/URODH_AGRFC URODH_AGRFC] Catalyzes the oxidation of D-galacturonate and D-glucuronate to galactarate and D-glucarate, respectively. In fact, in water solution the substrate D-galacturonate is predominantly in pyranosic form whose beta anomer is converted by the enzyme to D-galactaro-1,5-lactone; in solution, this reaction product rearranges to the more stable D-galactaro-1,4-lactone. Makes part of the oxidative degradation pathway of D-galacturonate, which allows A.tumefaciens to utilize D-galacturonate as a sole carbon source. Cannot use NADP(+) instead of NAD(+) as cosubstrate. Is not active on D-galactose, D-glucose, D-galactonate and D-gluconate.<ref>PMID:19060141</ref> <ref>PMID:19921179</ref> <ref>PMID:21676870</ref>
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_21676870}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 21676870 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Agrobacterium fabrum str. C58]]
-
{{ABSTRACT_PUBMED_21676870}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Parkkinen T]]
-
==About this Structure==
+
[[Category: Rouvinen J]]
-
[[3rft]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RFT OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:021676870</ref><references group="xtra"/>
+
-
[[Category: Agrobacterium tumefaciens]]
+
-
[[Category: Uronate dehydrogenase]]
+
-
[[Category: Parkkinen, T.]]
+
-
[[Category: Rouvinen, J.]]
+
-
[[Category: Apoenzyme]]
+
-
[[Category: Nad binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rossmann fold]]
+

Current revision

Crystal structure of uronate dehydrogenase from Agrobacterium tumefaciens

PDB ID 3rft

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3rft"
Personal tools