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2g84
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2g84" size="350" color="white" frame="true" align="right" spinBox="true" caption="2g84, resolution 1.40Å" /> '''Cytidine and deoxycy...) |
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| - | [[Image:2g84.gif|left|200px]]<br /><applet load="2g84" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2g84, resolution 1.40Å" /> | ||
| - | '''Cytidine and deoxycytidylate deaminase zinc-binding region from Nitrosomonas europaea.'''<br /> | ||
| - | == | + | ==Cytidine and deoxycytidylate deaminase zinc-binding region from Nitrosomonas europaea.== |
| - | + | <StructureSection load='2g84' size='340' side='right'caption='[[2g84]], [[Resolution|resolution]] 1.40Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | + | <table><tr><td colspan='2'>[[2g84]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea_ATCC_19718 Nitrosomonas europaea ATCC 19718]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G84 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G84 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g84 OCA], [https://pdbe.org/2g84 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g84 RCSB], [https://www.ebi.ac.uk/pdbsum/2g84 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g84 ProSAT], [https://www.topsan.org/Proteins/MCSG/2g84 TOPSAN]</span></td></tr> |
| - | + | </table> | |
| - | [ | + | == Function == |
| - | [ | + | [https://www.uniprot.org/uniprot/Q82Y41_NITEU Q82Y41_NITEU] |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | [ | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g8/2g84_consurf.spt"</scriptWhenChecked> | |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | + | </jmolCheckbox> | |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g84 ConSurf]. | |
| - | [ | + | <div style="clear:both"></div> |
| - | [[ | + | |
| - | [ | + | |
| - | + | ==See Also== | |
| + | *[[Deaminase 3D structures|Deaminase 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Nitrosomonas europaea ATCC 19718]] | ||
| + | [[Category: Edwards A]] | ||
| + | [[Category: Joachimiak A]] | ||
| + | [[Category: Onopriyenko O]] | ||
| + | [[Category: Osipiuk J]] | ||
| + | [[Category: Savchenko A]] | ||
| + | [[Category: Skarina T]] | ||
Current revision
Cytidine and deoxycytidylate deaminase zinc-binding region from Nitrosomonas europaea.
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