This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ggs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2ggs" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ggs, resolution 1.70&Aring;" /> '''crystal structure of...)
Current revision (08:49, 25 October 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ggs.gif|left|200px]]<br /><applet load="2ggs" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ggs, resolution 1.70&Aring;" />
 
-
'''crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii'''<br />
 
-
==About this Structure==
+
==crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii==
-
2GGS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii] with <scene name='pdbligand=NDP:'>NDP</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/dTDP-4-dehydrorhamnose_reductase dTDP-4-dehydrorhamnose reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.133 1.1.1.133] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGS OCA].
+
<StructureSection load='2ggs' size='340' side='right'caption='[[2ggs]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Sulfolobus tokodaii]]
+
<table><tr><td colspan='2'>[[2ggs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GGS FirstGlance]. <br>
-
[[Category: dTDP-4-dehydrorhamnose reductase]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
[[Category: Kuramitsu, S.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
-
[[Category: Masui, R.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ggs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ggs OCA], [https://pdbe.org/2ggs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ggs RCSB], [https://www.ebi.ac.uk/pdbsum/2ggs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ggs ProSAT]</span></td></tr>
-
[[Category: Mizushima, T.]]
+
</table>
-
[[Category: Rajakannan, V.]]
+
== Function ==
-
[[Category: Suzuki, A.]]
+
[https://www.uniprot.org/uniprot/Q96Z61_SULTO Q96Z61_SULTO]
-
[[Category: Yamane, T.]]
+
== Evolutionary Conservation ==
-
[[Category: NDP]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: alpha]]
+
Check<jmol>
-
[[Category: beta]]
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/2ggs_consurf.spt"</scriptWhenChecked>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 19:59:03 2008''
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ggs ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Sulfurisphaera tokodaii]]
 +
[[Category: Kuramitsu S]]
 +
[[Category: Masui R]]
 +
[[Category: Mizushima T]]
 +
[[Category: Rajakannan V]]
 +
[[Category: Suzuki A]]
 +
[[Category: Yamane T]]

Current revision

crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii

PDB ID 2ggs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ggs"
Personal tools