2gpi
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2gpi" size="350" color="white" frame="true" align="right" spinBox="true" caption="2gpi, resolution 1.600Å" /> '''Crystal structure o...) |
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| - | [[Image:2gpi.gif|left|200px]]<br /><applet load="2gpi" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2gpi, resolution 1.600Å" /> | ||
| - | '''Crystal structure of a protein of unknown function from DUF1488 family (ZP_00837230.1) from Shewanella sp. PV-4 at 1.60 A resolution.'''<br /> | ||
| - | == | + | ==Crystal structure of a protein of unknown function from duf1488 family (shew_3726) from shewanella loihica pv-4 at 1.60 A resolution== |
| - | + | <StructureSection load='2gpi' size='340' side='right'caption='[[2gpi]], [[Resolution|resolution]] 1.60Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [ | + | <table><tr><td colspan='2'>[[2gpi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_loihica_PV-4 Shewanella loihica PV-4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GPI FirstGlance]. <br> |
| - | [ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
| - | [ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpi OCA], [https://pdbe.org/2gpi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gpi RCSB], [https://www.ebi.ac.uk/pdbsum/2gpi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpi ProSAT], [https://www.topsan.org/Proteins/JCSG/2gpi TOPSAN]</span></td></tr> |
| - | [[ | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/A3QJE4_SHELP A3QJE4_SHELP] | |
| - | [ | + | == Evolutionary Conservation == |
| - | [[ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gpi_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gpi ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Shewanella loihica PV-4]] | ||
Current revision
Crystal structure of a protein of unknown function from duf1488 family (shew_3726) from shewanella loihica pv-4 at 1.60 A resolution
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