2l8k

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[[Image:2l8k.jpg|left|200px]]
 
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==NMR Structure of the Arterivirus nonstructural protein 7 alpha (nsp7 alpha)==
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The line below this paragraph, containing "STRUCTURE_2l8k", creates the "Structure Box" on the page.
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<StructureSection load='2l8k' size='340' side='right'caption='[[2l8k]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2l8k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equine_arteritis_virus_Bucyrus Equine arteritis virus Bucyrus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L8K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L8K FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l8k OCA], [https://pdbe.org/2l8k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l8k RCSB], [https://www.ebi.ac.uk/pdbsum/2l8k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l8k ProSAT]</span></td></tr>
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{{STRUCTURE_2l8k| PDB=2l8k | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RPOA_EAVBU RPOA_EAVBU] The replicase polyprotein 1ab is a multifunctional protein: it contains the activities necessary for the transcription of negative stranded RNA, leader RNA, subgenomic mRNAs and progeny virion RNA as well as proteinases responsible for the cleavage of the polyprotein into functional products.<ref>PMID:18078692</ref> Nsp1 is essential for viral subgenomic mRNA synthesis.<ref>PMID:18078692</ref> Nsp2 cysteine proteinase which cleaves the nsp2/nsp3 site in the polyprotein. Also displays deubiquitinating and deISGylase activities. The deubiquitinating activity cleaves both ubiquitinated and ISGylated products and may therefore regulate ubiquitin and ISG15 dependent host innate immunity.<ref>PMID:18078692</ref> The 3C-like serine proteinase chain is responsible for the majority of cleavages as it cleaves the C-terminus of the polyprotein.<ref>PMID:18078692</ref> The helicase chain, which contains a zinc finger structure, displays RNA and DNA duplex-unwinding activities with 5' to 3' polarity.<ref>PMID:18078692</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Arterivirus replicase polyproteins are cleaved into at least 13 mature nonstructural proteins (nsps), and in particular the nsp5-to-nsp8 region is subject to a complex processing cascade. The function of the largest subunit from this region, nsp7, which is further cleaved into nsp7alpha and nsp7beta, is unknown. Using nuclear magnetic resonance (NMR) spectroscopy, we determined the solution structure of nsp7alpha of equine arteritis virus, revealing an interesting unique fold for this protein but thereby providing little clue to its possible functions. Nevertheless, structure-based reverse genetics studies established the importance of nsp7/nsp7alpha for viral RNA synthesis, thus providing a basis for future studies.
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===NMR Structure of the Arterivirus nonstructural protein 7 alpha (nsp7 alpha)===
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Structure and Genetic Analysis of the Arterivirus Nonstructural Protein 7{alpha}.,Manolaridis I, Gaudin C, Posthuma CC, Zevenhoven-Dobbe JC, Imbert I, Canard B, Kelly G, Tucker PA, Conte MR, Snijder EJ J Virol. 2011 Jul;85(14):7449-53. Epub 2011 May 11. PMID:21561912<ref>PMID:21561912</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2l8k" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_21561912}}, adds the Publication Abstract to the page
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*[[Nonstructural protein 3D structures|Nonstructural protein 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 21561912 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21561912}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Equine arteritis virus Bucyrus]]
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[[2l8k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equine_arteritis_virus Equine arteritis virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L8K OCA].
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[[Category: Large Structures]]
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[[Category: Conte MR]]
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==Reference==
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[[Category: Gaudin C]]
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<ref group="xtra">PMID:021561912</ref><references group="xtra"/>
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[[Category: Kelly G]]
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[[Category: Equine arteritis virus]]
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[[Category: Manolaridis I]]
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[[Category: Conte, M R.]]
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[[Category: Tucker PW]]
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[[Category: Gaudin, C.]]
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[[Category: Kelly, G.]]
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[[Category: Manolaridis, I.]]
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[[Category: Tucker, P W.]]
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[[Category: Viral protein]]
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Current revision

NMR Structure of the Arterivirus nonstructural protein 7 alpha (nsp7 alpha)

PDB ID 2l8k

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