This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1kw8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:26, 13 March 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1kw8.png|left|200px]]
 
-
<!--
+
==Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex==
-
The line below this paragraph, containing "STRUCTURE_1kw8", creates the "Structure Box" on the page.
+
<StructureSection load='1kw8' size='340' side='right'caption='[[1kw8]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1kw8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._KKS102 Pseudomonas sp. KKS102]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdg 1gdg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KW8 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPY:BIPHENYL-2,3-DIOL'>BPY</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr>
-
{{STRUCTURE_1kw8| PDB=1kw8 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kw8 OCA], [https://pdbe.org/1kw8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kw8 RCSB], [https://www.ebi.ac.uk/pdbsum/1kw8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kw8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BPHC_PSES1 BPHC_PSES1]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/1kw8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kw8 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex===
+
==See Also==
-
 
+
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12206778}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 12206778 is the PubMed ID number.
+
[[Category: Pseudomonas sp. KKS102]]
-
-->
+
[[Category: Fukuda M]]
-
{{ABSTRACT_PUBMED_12206778}}
+
[[Category: Masai E]]
-
 
+
[[Category: Nishizaki T]]
-
==About this Structure==
+
[[Category: Nonaka T]]
-
[[1kw8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdg 1gdg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW8 OCA].
+
[[Category: Sato N]]
-
 
+
[[Category: Sazaki G]]
-
==Reference==
+
[[Category: Senda T]]
-
<ref group="xtra">PMID:012206778</ref><references group="xtra"/>
+
[[Category: Sugimoto K]]
-
[[Category: Biphenyl-2,3-diol 1,2-dioxygenase]]
+
[[Category: Takahashi Y]]
-
[[Category: Pseudomonas sp.]]
+
[[Category: Uragami Y]]
-
[[Category: Fukuda, M.]]
+
-
[[Category: Masai, E.]]
+
-
[[Category: Nishizaki, T.]]
+
-
[[Category: Nonaka, T.]]
+
-
[[Category: Sato, N.]]
+
-
[[Category: Sazaki, G.]]
+
-
[[Category: Senda, T.]]
+
-
[[Category: Sugimoto, K.]]
+
-
[[Category: Takahashi, Y.]]
+
-
[[Category: Uragami, Y.]]
+
-
[[Category: Four time repetitions of the beta-alpha-beta-beta-beta motif]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex

PDB ID 1kw8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1kw8"
Personal tools