2w0c

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[[Image:2w0c.png|left|200px]]
 
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==X-ray structure of the entire lipid-containing bacteriophage PM2==
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The line below this paragraph, containing "STRUCTURE_2w0c", creates the "Structure Box" on the page.
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<SX load='2w0c' size='340' side='right' viewer='molstar' caption='[[2w0c]], [[Resolution|resolution]] 7.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2w0c]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_virus_PM2 Pseudoalteromonas virus PM2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W0C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W0C FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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{{STRUCTURE_2w0c| PDB=2w0c | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w0c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w0c OCA], [https://pdbe.org/2w0c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w0c RCSB], [https://www.ebi.ac.uk/pdbsum/2w0c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w0c ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSD_BPPM2 CAPSD_BPPM2] Major capsid protein.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w0/2w0c_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w0c ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Recent, primarily structural observations indicate that related viruses, harboring no sequence similarity, infect hosts of different domains of life. One such clade of viruses, defined by common capsid architecture and coat protein fold, is the so-called PRD1-adenovirus lineage. Here we report the structure of the marine lipid-containing bacteriophage PM2 determined by crystallographic analyses of the entire approximately 45 MDa virion and of the outer coat proteins P1 and P2, revealing PM2 to be a primeval member of the PRD1-adenovirus lineage with an icosahedral shell and canonical double beta barrel major coat protein. The view of the lipid bilayer, richly decorated with membrane proteins, constitutes a rare visualization of an in vivo membrane. The viral membrane proteins P3 and P6 are organized into a lattice, suggesting a possible assembly pathway to produce the mature virus.
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===X-RAY STRUCTURE OF THE ENTIRE LIPID-CONTAINING BACTERIOPHAGE PM2===
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Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2.,Abrescia NG, Grimes JM, Kivela HM, Assenberg R, Sutton GC, Butcher SJ, Bamford JK, Bamford DH, Stuart DI Mol Cell. 2008 Sep 5;31(5):749-61. PMID:18775333<ref>PMID:18775333</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18775333}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2w0c" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18775333 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18775333}}
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__TOC__
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</SX>
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==About this Structure==
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[[Category: Large Structures]]
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[[2w0c]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_phage_pm2 Pseudoalteromonas phage pm2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W0C OCA].
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[[Category: Pseudoalteromonas virus PM2]]
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[[Category: Abrescia NGA]]
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==Reference==
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[[Category: Assenberg R]]
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<ref group="xtra">PMID:018775333</ref><ref group="xtra">PMID:016511151</ref><ref group="xtra">PMID:018082422</ref><references group="xtra"/>
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[[Category: Bamford DH]]
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[[Category: Pseudoalteromonas phage pm2]]
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[[Category: Bamford JKH]]
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[[Category: Abrescia, N G.A.]]
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[[Category: Butcher SJ]]
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[[Category: Assenberg, R.]]
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[[Category: Grimes JM]]
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[[Category: Bamford, D H.]]
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[[Category: Kivela HM]]
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[[Category: Bamford, J K.H.]]
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[[Category: Stuart DI]]
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[[Category: Butcher, S J.]]
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[[Category: Sutton GC]]
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[[Category: Grimes, J M.]]
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[[Category: Kivela, H M.]]
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[[Category: Stuart, D I.]]
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[[Category: Sutton, G C.]]
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[[Category: Capsid protein]]
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[[Category: Member of prd1-adeno viral lineage]]
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[[Category: Membrane]]
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[[Category: Membrane-containing bacteriophage]]
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[[Category: Transmembrane]]
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[[Category: Virus]]
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[[Category: Virus virion]]
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Current revision

X-ray structure of the entire lipid-containing bacteriophage PM2

2w0c, resolution 7.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

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