2kto

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[[Image:2kto.png|left|200px]]
 
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==Spatial structure of Lch-beta peptide from two-component lantibiotic Lichenicidin VK21==
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The line below this paragraph, containing "STRUCTURE_2kto", creates the "Structure Box" on the page.
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<StructureSection load='2kto' size='340' side='right'caption='[[2kto]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2kto]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_licheniformis_DSM_13_=_ATCC_14580 Bacillus licheniformis DSM 13 = ATCC 14580]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KTO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KTO FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2KT:2-KETOBUTYRIC+ACID'>2KT</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=DBB:D-ALPHA-AMINOBUTYRIC+ACID'>DBB</scene>, <scene name='pdbligand=DBU:(2Z)-2-AMINOBUT-2-ENOIC+ACID'>DBU</scene>, <scene name='pdbligand=DHA:2-AMINO-ACRYLIC+ACID'>DHA</scene>, <scene name='pdbligand=PRD_000198:BETA+LICHENICIDIN+PREPEPTIDE'>PRD_000198</scene></td></tr>
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{{STRUCTURE_2kto| PDB=2kto | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kto OCA], [https://pdbe.org/2kto PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kto RCSB], [https://www.ebi.ac.uk/pdbsum/2kto PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kto ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/LANLB_BACLI LANLB_BACLI]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A novel synergetic lantibiotic pair, Lchalpha(3249.51 Da) and Lchbeta(3019.36 Da), termed lichenicidin VK21, was isolated from the producer strain Bacillus licheniformis VK21. Chemical and spatial structures of Lchalphaand Lchbeta were determined. Each peptide contains 31 amino acid residues linked by 4 intramolecular thioether bridges and the N-terminal 2-oxobutyryl group. Spatial structures of Lchalpha and Lchbetawere studied by NMR spectroscopy in methanol solution. Lchalpha peptide displays structural homology with mersacidin-like lantibiotics and involves relatively well-structured N- and C-terminal domains connected by a flexible loop stabilized by thioether bridge Ala11-S-Ala21. In contrast, the Lchbetapeptide represents prolonged hydrophobic alpha-helix flanked with more flexible N- and C-terminal domains. A lantibiotic cluster of the Bacillus licheniformis VK21 genome which comprises the structural genes, lchA1 and lchA2, encoding the lantibiotics precursors, as well as the gene of a modifying enzyme lchM1, was amplified and sequenced. The mature peptides, Lchalphaand Lchbetainteract synergistically to possess antibiotic activity against Gram-positive bacteria within a nanomolar concentration range, though the individual peptides were shown to be active at micromolar concentrations. Our results afford molecular insight into mechanism of lichenicidin VK21 action.
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===Spatial structure of Lch-beta peptide from two-component lantibiotic Lichenicidin VK21===
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Isolation, structure elucidation, and synergistic antibacterial activity of a novel two-component lantibiotic lichenicidin from Bacillus licheniformis VK21.,Shenkarev ZO, Finkina EI, Nurmukhamedova EK, Balandin SV, Mineev KS, Nadezhdin KD, Yakimenko ZA, Tagaev AA, Temirov YV, Arseniev AS, Ovchinnikova TV Biochemistry. 2010 Jun 25. PMID:20578714<ref>PMID:20578714</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_20578714}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2kto" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20578714 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20578714}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Bacillus licheniformis DSM 13 = ATCC 14580]]
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[[2kto]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_licheniformis Bacillus licheniformis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KTO OCA].
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[[Category: Large Structures]]
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[[Category: Arseniev AS]]
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==Reference==
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[[Category: Mineev KS]]
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<ref group="xtra">PMID:020578714</ref><references group="xtra"/>
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[[Category: Ovchinnikova TV]]
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[[Category: Bacillus licheniformis]]
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[[Category: Shenkarev ZO]]
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[[Category: Arseniev, A S.]]
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[[Category: Mineev, K S.]]
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[[Category: Ovchinnikova, T V.]]
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[[Category: Shenkarev, Z O.]]
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[[Category: Antibiotic]]
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[[Category: Lanthionine]]
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[[Category: Lantibiotic]]
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[[Category: Lchb]]
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[[Category: Lichenicidin vk21]]
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[[Category: Thioester]]
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[[Category: Two-component lantibiotic system]]
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Current revision

Spatial structure of Lch-beta peptide from two-component lantibiotic Lichenicidin VK21

PDB ID 2kto

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