2ib6

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(New page: 200px<br /><applet load="2ib6" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ib6, resolution 2.00&Aring;" /> '''Structural character...)
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[[Image:2ib6.gif|left|200px]]<br /><applet load="2ib6" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2ib6, resolution 2.00&Aring;" />
 
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'''Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus'''<br />
 
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==Overview==
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==Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus==
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Green fluorescent protein (GFP) and its relatives (GFP protein family), have been isolated from marine organisms such as jellyfish and corals that, belong to the phylum Cnidaria (stinging aquatic invertebrates). They are, intrinsically fluorescent proteins. In search of new members of the family, of green fluorescent protein family, we identified a non-fluorescent, chromoprotein from the Cnidopus japonicus species of sea anemone that, possesses 45% sequence identity to dsRed (a red fluorescent protein). This, newly identified blue color protein has an absorbance maximum of 610 nm, and is hereafter referred to as cjBlue. Determination of the cjBlue 1.8 A, crystal structure revealed a chromophore comprised of, Gln(63)-Tyr(64)-Gly(65). The ring stacking between Tyr(64) and His(197), stabilized the cjBlue trans chromophore conformation along the, Calpha2-Cbeta2 bond of 5-[(4-hydroxyphenyl)methylene]-imidazolinone, which, closely resembled that of the "Kindling Fluorescent Protein" and Rtms5., Replacement of Tyr(64) with Leu in wild-type cjBlue produced a visible, color change from blue to yellow with a new absorbance maximum of 417 nm., Interestingly, the crystal structure of the yellow mutant Y64L revealed, two His(197) imidazole ring orientations, suggesting a flip-flop, interconversion between the two conformations in solution. We conclude, that the dynamics and structure of the chromophore are both essential for, the optical appearance of these color proteins.
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<StructureSection load='2ib6' size='340' side='right'caption='[[2ib6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2ib6]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Epiactis_japonica Epiactis japonica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IB6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IB6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=QLG:[(4Z)-2-[(1Z)-4-AMINO-4-OXOBUTANIMIDOYL]-4-(2-METHYLPROPYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>QLG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ib6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ib6 OCA], [https://pdbe.org/2ib6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ib6 RCSB], [https://www.ebi.ac.uk/pdbsum/2ib6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ib6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0AQQ8_EPIJA A0AQQ8_EPIJA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/2ib6_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ib6 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Green fluorescent protein (GFP) and its relatives (GFP protein family) have been isolated from marine organisms such as jellyfish and corals that belong to the phylum Cnidaria (stinging aquatic invertebrates). They are intrinsically fluorescent proteins. In search of new members of the family of green fluorescent protein family, we identified a non-fluorescent chromoprotein from the Cnidopus japonicus species of sea anemone that possesses 45% sequence identity to dsRed (a red fluorescent protein). This newly identified blue color protein has an absorbance maximum of 610 nm and is hereafter referred to as cjBlue. Determination of the cjBlue 1.8 A crystal structure revealed a chromophore comprised of Gln(63)-Tyr(64)-Gly(65). The ring stacking between Tyr(64) and His(197) stabilized the cjBlue trans chromophore conformation along the Calpha2-Cbeta2 bond of 5-[(4-hydroxyphenyl)methylene]-imidazolinone, which closely resembled that of the "Kindling Fluorescent Protein" and Rtms5. Replacement of Tyr(64) with Leu in wild-type cjBlue produced a visible color change from blue to yellow with a new absorbance maximum of 417 nm. Interestingly, the crystal structure of the yellow mutant Y64L revealed two His(197) imidazole ring orientations, suggesting a flip-flop interconversion between the two conformations in solution. We conclude that the dynamics and structure of the chromophore are both essential for the optical appearance of these color proteins.
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==About this Structure==
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Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone Cnidopus japonicus.,Chan MC, Karasawa S, Mizuno H, Bosanac I, Ho D, Prive GG, Miyawaki A, Ikura M J Biol Chem. 2006 Dec 8;281(49):37813-9. Epub 2006 Oct 6. PMID:17028187<ref>PMID:17028187</ref>
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2IB6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Cnidopus_japonicus Cnidopus japonicus] with <scene name='pdbligand=PO4:'>PO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IB6 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone Cnidopus japonicus., Chan MC, Karasawa S, Mizuno H, Bosanac I, Ho D, Prive GG, Miyawaki A, Ikura M, J Biol Chem. 2006 Dec 8;281(49):37813-9. Epub 2006 Oct 6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17028187 17028187]
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</div>
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[[Category: Cnidopus japonicus]]
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<div class="pdbe-citations 2ib6" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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[[Category: Bosanac, I.]]
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<references/>
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[[Category: Chan, M.C.Y.]]
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__TOC__
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[[Category: Ho, D.]]
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</StructureSection>
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[[Category: Ikura, M.]]
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[[Category: Epiactis japonica]]
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[[Category: Prive, G.]]
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[[Category: Large Structures]]
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[[Category: PO4]]
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[[Category: Bosanac I]]
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[[Category: alpha helix]]
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[[Category: Chan MCY]]
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[[Category: beta barrel]]
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[[Category: Ho D]]
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[[Category: chromophore]]
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[[Category: Ikura M]]
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[[Category: chromoprotein]]
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[[Category: Prive G]]
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[[Category: gfp-like protein]]
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[[Category: yellow]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 20:38:07 2008''
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Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus

PDB ID 2ib6

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