2ics

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2ics" size="350" color="white" frame="true" align="right" spinBox="true" caption="2ics, resolution 2.30&Aring;" /> '''Crystal structure of...)
Current revision (22:24, 26 March 2025) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ics.gif|left|200px]]<br /><applet load="2ics" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ics, resolution 2.30&Aring;" />
 
-
'''Crystal structure of an adenine deaminase'''<br />
 
-
==About this Structure==
+
==Crystal structure of an adenine deaminase==
-
2ICS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis] with <scene name='pdbligand=ZN:'>ZN</scene> and <scene name='pdbligand=ADE:'>ADE</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Adenine_deaminase Adenine deaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.2 3.5.4.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICS OCA].
+
<StructureSection load='2ics' size='340' side='right'caption='[[2ics]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
[[Category: Adenine deaminase]]
+
== Structural highlights ==
-
[[Category: Enterococcus faecalis]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ICS FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
[[Category: Burley, S.K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[Category: Kumaran, D.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ics FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ics OCA], [https://pdbe.org/2ics PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ics RCSB], [https://www.ebi.ac.uk/pdbsum/2ics PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ics ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ics TOPSAN]</span></td></tr>
-
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+
</table>
-
[[Category: Sugadev, R.]]
+
== Evolutionary Conservation ==
-
[[Category: Swaminathan, S.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: ADE]]
+
Check<jmol>
-
[[Category: ZN]]
+
<jmolCheckbox>
-
[[Category: 9295a]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/2ics_consurf.spt"</scriptWhenChecked>
-
[[Category: adenine complex]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: adenine deaminase]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: amidohydrolase]]
+
</jmolCheckbox>
-
[[Category: binuclear zinc]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ics ConSurf].
-
[[Category: new york structural genomix research consortium]]
+
<div style="clear:both"></div>
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomics]]
+
-
[[Category: tim barrel]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 20:38:53 2008''
+
==See Also==
 +
*[[Deaminase 3D structures|Deaminase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Burley SK]]
 +
[[Category: Kumaran D]]
 +
[[Category: Sugadev R]]
 +
[[Category: Swaminathan S]]

Current revision

Crystal structure of an adenine deaminase

PDB ID 2ics

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ics"
Personal tools