3byc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3byc" [edit=sysop:move=sysop])
Current revision (09:31, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3byc.png|left|200px]]
 
-
<!--
+
==Joint neutron and X-ray structure of diisopropyl fluorophosphatase. Deuterium occupancies are 1-Q, where Q is occupancy of H==
-
The line below this paragraph, containing "STRUCTURE_3byc", creates the "Structure Box" on the page.
+
<StructureSection load='3byc' size='340' side='right'caption='[[3byc]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3byc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Loligo_vulgaris Loligo vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BYC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BYC FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Hybrid , Neutron Diffraction , X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DOD:DEUTERATED+WATER'>DOD</scene></td></tr>
-
{{STRUCTURE_3byc| PDB=3byc | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3byc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3byc OCA], [https://pdbe.org/3byc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3byc RCSB], [https://www.ebi.ac.uk/pdbsum/3byc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3byc ProSAT]</span></td></tr>
-
 
+
</table>
-
===Joint neutron and X-ray structure of diisopropyl fluorophosphatase. Deuterium occupancies are 1-Q, where Q is occupancy of H===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DFPA_LOLVU DFPA_LOLVU] Biological function and substrate unknown. However, it is capable of acting on phosphorus anhydride bonds (such as phosphorus-halide and phosphorus-cyanide) in organophosphorus compounds (including nerve gases).<ref>PMID:15966726</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_19136630}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19136630 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/3byc_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_19136630}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3byc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Loligo_vulgaris Loligo vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BYC OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3byc ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:019136630</ref><references group="xtra"/>
+
<references/>
-
[[Category: Diisopropyl-fluorophosphatase]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Loligo vulgaris]]
[[Category: Loligo vulgaris]]
-
[[Category: Blum, M M.]]
+
[[Category: Blum M-M]]
-
[[Category: Chen, J C.H.]]
+
[[Category: Chen JC-H]]
-
[[Category: Langan, P.]]
+
[[Category: Langan P]]
-
[[Category: Mustyakimov, M.]]
+
[[Category: Mustyakimov M]]
-
[[Category: Ruterjans, H.]]
+
[[Category: Ruterjans H]]
-
[[Category: Schoenborn, B P.]]
+
[[Category: Schoenborn BP]]
-
[[Category: Beta-propeller]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Phosphotriesterase]]
+

Current revision

Joint neutron and X-ray structure of diisopropyl fluorophosphatase. Deuterium occupancies are 1-Q, where Q is occupancy of H

PDB ID 3byc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3byc"
Personal tools